Gene Information

Name : HMPREF0538_20935 (HMPREF0538_20935)
Accession : YP_004649436.1
Strain : Lactobacillus reuteri SD2112
Genome accession: NC_015697
Putative virulence/resistance : Virulence
Product : carbon dioxide concentrating mechanism/carboxysome shell protein
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 917212 - 917490 bp
Length : 279 bp
Strand : -
Note : COG: COG4577

DNA sequence : 
ATGGGACAAGAAGCACTTGGTTTAATTGAAACTAAAGGACTTGTAGCATCAATTGAAGCTGCCGATGCAATGGTTAAGGC
AGCTAATGTTAAATTGATCGGTCAAGAAAAAATTGGTCACGGATTAGTAACTGTTATGGTTCGTGGTGATGTTGGTGCTG
TTAAAGCATCAGTTGACGCTGGTGTTCAGGCTGCTGAAAATATTGGGGAAGTTGTTTCTAACTACGTAATTCCACGTCCT
CAATCTGAAGTTGAAAAGCTCTTACCAAATAAAGAATAA

Protein sequence : 
MGQEALGLIETKGLVASIEAADAMVKAANVKLIGQEKIGHGLVTVMVRGDVGAVKASVDAGVQAAENIGEVVSNYVIPRP
QSEVEKLLPNKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 6e-23 71
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 9e-24 69
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 5e-24 67

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0538_20935 YP_004649436.1 carbon dioxide concentrating mechanism/carboxysome shell protein VFG1596 Protein 3e-23 71
HMPREF0538_20935 YP_004649436.1 carbon dioxide concentrating mechanism/carboxysome shell protein VFG1598 Protein 4e-24 69
HMPREF0538_20935 YP_004649436.1 carbon dioxide concentrating mechanism/carboxysome shell protein VFG1597 Protein 2e-24 67