|
Name : Zymop_0510 (Zymop_0510) Accession : YP_004661702.1 Strain : Zymomonas mobilis ATCC 29192 Genome accession: NC_015709 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 590516 - 594688 bp Length : 4173 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; KEGG: mes:Meso_1819 DNA-directed RNA polymerase subunit beta; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase Rpb2 domain 2; RNA polymerase DNA sequence : ATGGCGACCAAGGCATCTGCTATCGGCCATGCGAGTATGAAGAAGCGTATTCGCAAGATGTTTGGTAATATCCATGAAGT AGTGGATATGCCGAATCTGATTGAAGTTCAGCGTGATAGTTATGAAAACTTTCTGCGTTCACGCCCACAGGATAATTATG TTTCGGGATTAGAAAAGACACTTCGGTCTGTCTTCCCGATCCGTGATTTTGGGGGCGTGGCTGAGCTGGATTTTGTTCAG TATGAGCTTGAAGAACCCAAATTTGACGTAGATGAATGTCGTCAGCGGGGTATTACCTATGCTGCACCGATGCGCGTCAC CTTGCGTCTGATCGTTTTTGAAGTCGATCCCGACACTGACACCCGTTCTGTTCTCGATATTAAAGAACAAGATGTCTATA TGGGTGACATGCCCCTCATGACGCGGAATGGTACCTTCTTCATCAATGGTACAGAACGCGTTATTGTCAGCCAGATGCAT CGTAGCCCGGGTGTTCTGTTTGATCATGATAAAGGTAAAACGCATTCTTCAGGTAAATACCTGTTTGCTGCCCGTGTTAT TCCTTATCGTGGTTCTTGGCTCGATTTTGAATTCGATGCCAAAGATATTGTTAATGTTCGGATTGACCGTAAGCGCAAGT TACCGGTTACGAGCCTACTCTATGCTTTAGGCCTGAATGCAGAACAGATTCTGCATCATTTTTATAATACGATCACTTTC GTCCGTGGTGACGGGGGCTGGAAGGTGCCTTATATCGCTGAAAGCTGGCGTGGTCGTAAACCGATTTTTGATATCGTTAA TGGCGATACCGGCGAGGTTATCTTTCCAGCGGGTCAGAAAATTTCTCCACGTGCCGCCAATAAAGCCGGACGGGATGGTT TAGAAACGCTTCTCATTCCGACTGAAGAAATTTACGGTCACTATTCCGCCTACGATATTATCGAAGAATCAACGGGACGT ATCTGGATTGAGGCAGGTGATGAAGTCACGCCTGAAAATCTGGAATTACTGGATAATGCCGGTGTCGTCACTCTTGATCT TTTGGATATTGACCACGTTTCAACGGGTCCATGGATTCGGAATACCTTAAAGGCAGATAAAGCCGAAGATCGCGACCATG CCCTGGCCGAGATCTATCGTGTTATGCGTCCGGGGGAACCGCCCACCAAGGAAACGGCTGAAGCCCTTTTCTATGGTTTG TTCTTCGATCCAGAACGTTATGACTTATCCGCTGTTGGTCGCGTAAAATTGAATATGCGTCTTGATCTGGATTGTCCGGA TACAACGACTACCTTACGCGCTGAAGATATTCTGGCCGTTGTAAAAACGCTGGTTGATCTAAAAGATGGTAAGGGAGAAG TCGACGATATCGATAACCTCGGTAACCGTCGTGTCCGTTCTGTCGGTGAATTGCTAGAAAATCAGTATCGTGTAGGTCTT CTCCGCATGGAACGCGCCGTTAAAGAGCGCATGTCCTCGGTTGATGTCTCAACGGTGATGCCGAATGATCTGATTAATGC GAAACCAGCGGTTGCCGCGGTTCGTGAATTCTTCGGTTCTTCGCAGCTTTCACAATTTATGGATCAGACCAACCCGCTTT CTGAAGTCACGCATAAACGTCGTGTTTCAGCGCTTGGGCCGGGTGGTCTAACGCGTGAACGTGCGGGCTTTGAAGTGCGC GACGTTCATCCTACGCATTATGGTCGTATCTGCCCGATTGAAACGCCAGAAGGTCCGAATATCGGCCTGATTAACTCGCT TGCTACCTTTAGCCGTATTAACAAATATGGCTTTATCGAAACGCCTTATCGTAAGGTCGTCGATCACAAGGTAACAAATG AGGTTGTCTATCTTTCCGCAATGGAAGAAAGCCGTTACACGGTTGCACAGGCTAACGCAGAATTAGATGCCGAAGGGCAT TTTGTGGAAGATCTGGTTTCTGCACGTGAAGCGGGTGAATTCCTCATGGCTCCGCGTGAACAGGTTACGTTGATGGATGT GAGCCCGAAACAGTTGGTTTCGGTAGCAGCCTCTCTCATTCCGTTCCTTGAAAACGATGATGCTAACCGCGCTTTGATGG GTTCCAACATGCAGCGGCAGGCTGTTCCGTTAGTTCGGGCAGAAGCACCGTTTGTTGGTACCGGAATGGAAGAAACCGTC GCACGTGATTCTGGAGCTGCCATCTCGGCCAGACGTTCCGGTATCGTCGATCAGGTTGATGCTTCTCGTATCGTTATCCG TACAACCGGCGAAGTCGAAGCTGGCAAACCCGGTGTCGACATCTATCGGTTAATGAAATTCCAGCGTTCTAATCAATCAA CCTGCATTAACCAGCGTCCGTTGGTAAGTGTTGGCGATATTGTGAATGCCGGTGATGTGTTAGCGGATGGGCCTTCCACC GAAATGGGTGAATTGGCGTTAGGGCGCAATGTGCTCGTCGCCTTTATGCCTTGGAATGGTTATAACTATGAAGATTCCAT TCTGATTTCCGAACGCATTGTGAAGGATGACGTGTTCACTTCAATTCACATTGATGAATTTGAAGTAATGGCACGGGATA CCAAGCTTGGGCCGGAAGATATTACCCGTGATATTCCGAATGTCGGCGAGGATGCCCTTCGCAACCTTGATGAAGCCGGT ATCGTTTATATCGGTGCAGAAGTGCAGCCGGGCGATATTTTAGTCGGTAAAATCACCCCCAAGGGCGAAAGCCCCATGAC GCCAGAAGAAAAATTGCTGCGCGCCATTTTTGGTGAAAAAGCGTCGGATGTTCGCGATACCTCCTTACGTCTGCCCCCCG GTGTTGCGGGTACTATTGTCGATGTTCGTGTCTTTAACCGTCATGGTGTGGATAAAGATGAACGCGCAATGGCTATCGAA CGCGAAGAAATTGAGCGTTTGACGAAAGACCGTGAGGATGAACGCGCGATTTTGAATCGCGCCACCTATGCGCAGCTTCA GGAAGTATTGATGGGTCAGCAGGTGGCTGCTGCTCCGCTCAAAACTATCCCAAAAGGTGCCGTAATTGACGAGGAAGTGC TCGTCTCTGTTGAACCCCATAAATGGTTCAAATTTGCGGTAATCGACGATGCACGTCAGGCTGACCTCGAAGCGATCAAA AATCAGTATGATAGTGCTGATGAGATCATTCGGAAGCGGTTTGAAGATCGCGTTGAAAAAGCACAACGGGGTGATGAATT ACCACCGGGTGTTCTGAAAATGGTAAAAGTCTTTGTCGCCGTGAAGCGTAAGCTTCAGCCAGGTGATAAGATGGCCGGTC GTCATGGTAACAAAGGGGTTATCAGCCGTATCTTGCCACCTGAAGATATGCCTTTCCTTGCGGATGGGACGCCTGTCGAT ATTGTGCTTAACCCATTGGGTGTGCCAAGTCGTATGAACATCGGTCAGATCTTCGAAACCCATTTGGGTTGGGCTGCTCG TGGTCTGGGTGCTAAAATCCGTAATGCTCTTGATGAATGGCGTGAAGCGAATGCTGATCGTTACGAATGGGATTTCTCTC CACCCGAAGCTGTGAAAGAACGGCTGTTGGAAGTCTATGGCGAGAAATATACAGACGATATCAATGCGCGTAGCGATGCC CAGATCGTTGAGATGGCTGGCCTTTTGAAAAATGGTGTGCCTATGGCAACGCCGGTTTTCGATGGTGCCAAACCTGAAGA TATTTCCGACATGTTAGCTCTGGCCGGTGTCGATGATTCTGGACAGGTTGAGCTTTACGATGGTCGGACAGGTGAACAGT TCGATCGTAAGGTGACGGTTGGGTATATTTATATGCTTAAACTGCATCATTTGGTCGATGACAAAATCCATGCCCGTTCC ATTGGCCCCTATAGTCTTGTCACGCAGCAGCCGCTGGGTGGTAAAGCACAGTTCGGTGGCCAGCGCTTCGGTGAAATGGA AGTTTGGGCGTTGCAGGCTTATGGGGCTGCTTATACCTTACAGGAAATGCTGACGGTCAAATCTGATGATGTCGTCGGCA GAACCAAGGTTTATGAAGCCATTGTAAAGGGCGATGACACCTTTGAGGCGGGCATTCCTGAAAGCTTCAATGTGCTTGTC AAGGAAATGCACAGTCTGGGGCTGAACGTCGAGCTTAAGACGACCAAGGCGCAGGATGAAGACGATGGCAGTTTTCAGGT AGCCGCTGAATAA Protein sequence : MATKASAIGHASMKKRIRKMFGNIHEVVDMPNLIEVQRDSYENFLRSRPQDNYVSGLEKTLRSVFPIRDFGGVAELDFVQ YELEEPKFDVDECRQRGITYAAPMRVTLRLIVFEVDPDTDTRSVLDIKEQDVYMGDMPLMTRNGTFFINGTERVIVSQMH RSPGVLFDHDKGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGLNAEQILHHFYNTITF VRGDGGWKVPYIAESWRGRKPIFDIVNGDTGEVIFPAGQKISPRAANKAGRDGLETLLIPTEEIYGHYSAYDIIEESTGR IWIEAGDEVTPENLELLDNAGVVTLDLLDIDHVSTGPWIRNTLKADKAEDRDHALAEIYRVMRPGEPPTKETAEALFYGL FFDPERYDLSAVGRVKLNMRLDLDCPDTTTTLRAEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGL LRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVR DVHPTHYGRICPIETPEGPNIGLINSLATFSRINKYGFIETPYRKVVDHKVTNEVVYLSAMEESRYTVAQANAELDAEGH FVEDLVSAREAGEFLMAPREQVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEETV ARDSGAAISARRSGIVDQVDASRIVIRTTGEVEAGKPGVDIYRLMKFQRSNQSTCINQRPLVSVGDIVNAGDVLADGPST EMGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEDALRNLDEAG IVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERAMAIE REEIERLTKDREDERAILNRATYAQLQEVLMGQQVAAAPLKTIPKGAVIDEEVLVSVEPHKWFKFAVIDDARQADLEAIK NQYDSADEIIRKRFEDRVEKAQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPPEDMPFLADGTPVD IVLNPLGVPSRMNIGQIFETHLGWAARGLGAKIRNALDEWREANADRYEWDFSPPEAVKERLLEVYGEKYTDDINARSDA QIVEMAGLLKNGVPMATPVFDGAKPEDISDMLALAGVDDSGQVELYDGRTGEQFDRKVTVGYIYMLKLHHLVDDKIHARS IGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLV KEMHSLGLNVELKTTKAQDEDDGSFQVAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 60 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 60 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 60 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| Zymop_0510 | YP_004661702.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 58 |
