|
Name : rpoB (TPCCA_0241) Accession : YP_004672985.1 Strain : Treponema paraluiscuniculi Cuniculi A Genome accession: NC_015714 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 244165 - 247701 bp Length : 3537 bp Strand : + Note : - DNA sequence : ATGTCAGCACGAGTTTGCAAAACACACAGAGTATACGTGGGAAAGGATGTCAGGAATTTTATGGACATCCCGGATCTCAT CGAAATCCAGCTCCGATCTTACGACACCTTTCTGCATGGGGCCCGGAATGCACCGTCCGGCGCCGACACCCTTATCTCCG GTACTACAGAGGAGCTCGGCCTCGAAGACGTATTCAAGACTACCTTTCCTATCGAGAGCTCTACGGGGGACATGACGCTC GAGTACCAATCATACTCCCTTGATGAGAAAAACATCAAGTTCTCCGAGGCGGAGTGCAAACAAAAGGGTTTGACGTACGC CATTCCGCTGAAGGCGCTTGTTGATTTACGTTTCAACAATACGGGGGAGATTAGGCGCAAAGACATTTATATGGGAGATA TCCCCAAGATGACTGAACGCGGCACCTTTATCATCAACGGTGCGGAGCGTGTGGTGGTATCCCAGATCCATCGTTCCCCT GGTGTTGTTTTTTCTCATGAGAAGGACAAGGAAGGACGGGAGGTATTCTCCAGCCGCATTATTCCGTACCGGGGAAGCTG GCTTGAATTTGAAATTGATCAGAAAAAAGATCTCATCTATGCAAAGCTTGATAAAAAGAGACGTATCCTAGGCACCGTGT TTTTGCGTGCGTTGCACTACGAAACGCGTGAGCAAATCATCGAGGCCTTTTACGCCATAGAAAAGACACCTGTTTGTCAG GATCGTGCGGAGTACGAGCTGCTCACAGGTAAGATCCTGGCACGATCGGTGACGGTGGAAAATGAGCAGGGTGAAACCCG GGTGTTGTACAAAGCAGGAGAGAAAATCCATCCCCATGTCATCGATGATCTGCTGCAAAACGGCATATGTGAGGTCTACG TTATTAACCTTGAAGCGGAAGGTTCGTTGCGTTCTGCGGTCGTTATCAATTGTCTTGAACGAGAGGAAATGAAGTTCTCT AAGTCGGGTGCACAGGACGAGCTTTCGCGTGAAGAGGCACTGTGTATTGTATACTCAGCGCTAAGACCAAGCGATCCTAT GACCATGGACGCGGCGGAAAAAGATTTGCAGACAATGTTTTTCTCCCCACGTCGCTATGATTTAGGGCGGGTGGGGCGCT ACAAGCTGAACAAGAAATTTCGCTCTGACTCGCCGACTACTGAGTGCACGCTCACCCTCGACGATATCGTAAATACCATG AAATTTCTCATCAGAATGTATAGCGGTGATGCACAGGAAGATGATATCGATCACCTGGGCAACCGTCGTATTCGTTCGGT GGGGGAATTAATGACCAATACGTTAAAAACGGCCTTTTTGCGCATGGAACGTATTGCGAAGGAGCGTATGAGTTCTAAGG AAACGGAAACGATCAAGCCGCAGGATCTCATTTCCATAAAACCTATCATGGCTGCGATTAAGGAGTTCTTTGGTGCAAGT CAGCTTTCTCAGTTCATGGATCAGGTCAATCCGCTGGCGGAGTTGACACACAAGCGACGTTTGAACGCACTTGGTCCTGG TGGACTTTCAAGGGAGCGTGCTGGGTTTGAGGTACGCGATGTGCACTACACGCACTACGGTCGGATGTGTCCCATTGAGA CCCCCGAGGGACCAAATATCGGTTTAATTGTTTCTATGGCCAATTACGCACGCGTTAACGGGTATGGGTTCTTGGAGGTG CCTTATGTACGGGTGCGTGACGGAGTTGTTACGAAAGAGATTGAGTACCTGGATGCTATGGACGAGGATCGCTACTACAT TGGGCAGGATTCTACGGCGGTAGGACCGGACGGAGTCATCCGTGTAGATCATGTCTCTTGTCGGCACCGGGGGGATTACA GTACGCGTAGTCCTAAGGATATCCAGTATATGGATGTTTCCCCCAAGCAGATAATTTCTGTTTCTGCTTCTCTCATACCG TTTCTTGAGCATGATGATGCTAACCGTGCGTTAATGGGGTCGAACATGCAACGGCAGGGAGTGCCGCTTATTTTTCCTGA ACCCCCGCGCGTGGGTACAGGCATGGAAGAGAAGTGTGCATATGACTCTGGAGTGCTGGTGAAGGCAAAGCAAGACGGAA CGGTTGCCTACGTTTCCTCAGAGAAGATAGTGGTTTGTTCCGCCGCGGCGTCTGGGGAAGAGCAGAAGATCGTGTATCCG TTACTTAAGTATCAGCGGACAAATCAGGATACCTGTTACCACCAGCGGCCAATAGTGCACGTGGGAGATCGGGTACAGGT AGGAGATGCGCTTGCAGACGGTCCTGCAACGTATCGAGGGGAGCTTGCGCTTGGCAGAAACATTCTAGTTGGTTTTGTGC CGTGGAACGGTTACAACTACGAGGATGCCATTTTGATTTCTCACCGGGTGGTAAAGGAGGATATGTTCACCTCGGTTCAC ATCAAAGAATTTTCTACTGAGGTGCGTGAAACCAAGCTGGGTTCTGAACGAATGACGAATGATATCCCGAATAAGTCTGA GAAGAATCTGGATAATTTGGATGCAGAAGGGATCATTCGTATTGGGTCAAAGGTGCGTGCGGGGGACGTGCTTATCGGAA AGATTACGCCAAAAAGCGAGTCTGAGACGACGCCAGAGTTTAGGCTGCTGAATTCTATTTTTGGGGAGAAGGCGAAGGAA GTGCGTGATTCTTCTCTACGTGTGCCGCATGGAGTTGAGGGTACAGTCATTGACGTGCAGCGACTCAGGCGTTCGGAGGG AGATGATTTAAACCCCGGGGTGTCAGAGGTGGTGAAGGTTCTTATCGCTACCAAGCGTAAGCTGCGTGAAGGGGATAAAA TGGCCGGTCGCCACGGTAACAAGGGTATCGTTGCGCGCATCCTTCCTGAAGAAGACATGCCGTATCTGGATGATGGTACC CCGCTTGATGTCTGTTTGAACCCGCTCGGTGTACCTTCTCGTATGAACATAGGACAGATTCTTGAATCTGAATTGGGACT TGCGGGGTTGCGGCTTGACGAATGGTATGAGTCTCCTGTCTTTCAATCTCCAAGCAACGAGCAGATTGGGGAAAAGTTGA TGCAGGCAGGTTTTCCGACTAATTCAAAAGTGATGCTGCGTGACGGACGCACGGGGGATTATTTTCAAAACCCTGTATTT GTGGGGGTTATTTACTTTATGAAGCTTGCGCATCTAGTGGATGACAAAATGCACGCCCGCTCTACAGGTCCATATTCGCT TGTGACGCAGCAACCCTTAGGGGGTAAAGCGCAGTTTGGAGGGCAGCGTCTCGGGGAAATGGAGGTGTGGGCGCTTGAAG CCTACGGCGCGGCGAATACCCTGCAGGAGTTGCTAACGATTAAATCGGATGATATGCACGGGCGTTCTAAAATTTATGAG GCAATTGTAAAGGGGGAGGCTTCGTCTCCTACCGGTATTCCTGAATCTTTTAACGTGTTGGTGCAGGAGCTGCGGGGACT TGCGCTCGACTTTACGATTTACGATGCGAAGGGCAAGCAGATTCCGCTCACTGAGCGCGATGAAGAAATGACGAATAAGA TTGGCTCTAAATTTTAA Protein sequence : MSARVCKTHRVYVGKDVRNFMDIPDLIEIQLRSYDTFLHGARNAPSGADTLISGTTEELGLEDVFKTTFPIESSTGDMTL EYQSYSLDEKNIKFSEAECKQKGLTYAIPLKALVDLRFNNTGEIRRKDIYMGDIPKMTERGTFIINGAERVVVSQIHRSP GVVFSHEKDKEGREVFSSRIIPYRGSWLEFEIDQKKDLIYAKLDKKRRILGTVFLRALHYETREQIIEAFYAIEKTPVCQ DRAEYELLTGKILARSVTVENEQGETRVLYKAGEKIHPHVIDDLLQNGICEVYVINLEAEGSLRSAVVINCLEREEMKFS KSGAQDELSREEALCIVYSALRPSDPMTMDAAEKDLQTMFFSPRRYDLGRVGRYKLNKKFRSDSPTTECTLTLDDIVNTM KFLIRMYSGDAQEDDIDHLGNRRIRSVGELMTNTLKTAFLRMERIAKERMSSKETETIKPQDLISIKPIMAAIKEFFGAS QLSQFMDQVNPLAELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANYARVNGYGFLEV PYVRVRDGVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVIRVDHVSCRHRGDYSTRSPKDIQYMDVSPKQIISVSASLIP FLEHDDANRALMGSNMQRQGVPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQKIVYP LLKYQRTNQDTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNYEDAILISHRVVKEDMFTSVH IKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIRIGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAKE VRDSSLRVPHGVEGTVIDVQRLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGT PLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPTNSKVMLRDGRTGDYFQNPVF VGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDMHGRSKIYE AIVKGEASSPTGIPESFNVLVQELRGLALDFTIYDAKGKQIPLTERDEEMTNKIGSKF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 53 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004672985.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
