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Name : rpoB (HYPMC_2583) Accession : YP_004676368.1 Strain : Hyphomicrobium sp. MC1 Genome accession: NC_015717 Putative virulence/resistance : Unknown Product : RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2421843 - 2426006 bp Length : 4164 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 2068078, 9893021; Product type e : enzyme DNA sequence : ATGGCTCAAACCCTCACCAGCCGCAAACGCCTCCGGAAGCAGTTTGGTTCTATCGGAGAAGTCGCGGAGATGCCGAACCT CATCGAGGTTCAGAAAGCGTCTTACGATGACTTCTTGATGGTCAAAGAGCCCCCGGGCGGCAGGCCGGACGATTTCGGCT TGCAGTCGGTGTTCAAGGGCGTTTTCCCGATCTCCGATTTCGCCGGCAAGTCGACGCTGGAATTCGTCAGCTACGAATTC GAGCCGCCGAAGTTCGACGTCGACGAGTGTATGCAGCGCGACATGACGTTCGCAGCGCCGCTCAAGGTCAAGCTGCGCCT GATCGTGTTCGATGTGAACGAAGAGACGGGCTCGAAGTCGATCAAGGACGTCAAGGAGCAGGACGTCTACATGGGCGACA TGCCGCTCATGACGTCGAACGGCACCTTCATCATCAACGGCACCGAGCGCGTGATCGTCTCGCAGATGCACCGTTCGCCG GGCGTCTTCTTCGACCACGATCGCGGCAAGACGCACTCTTCGGGCAAGCTATTGTTCGCAGCTCGCATCATTCCGTATCG CGGTTCCTGGCTCGACTTCGAGTTCGACGCGAAAGACATCGTCTATGTCCGTATCGACCGCCGCCGCAAGCTGCCGGTGA CGACGATGCTCTATGCCTTGGGCCTCGACGACGAAGAGATCCTCGCGCACTTCTACAAGCACATCTCGATCAAGGAATCG AAGCGCGGCTGGAAAATGCCGTTCCTGCCCGAGAAGTTCCGCGGCGTTACTCCGCAGTCCGACATCGCCGACGCTAAGAC CGGTGAAGTGATTGCGCGCGCTGGCGAGAAGATCACCGCACGCCGTTCGCGCGAGATCGCCGAAAGCGGCATCAAGGAAA TCCTGATCTCCGCTGAGGACCTCGCAGGCCGCTTCATCGCCGAAGACATCGTCGATATGGAGACGGGCAAGATCTTCGCC GAAGCCGGTGACGAGCTGGATGAGAATCTGTTGGCCGAGCTCAAGGAGCAGAAGGTCAAGGAATTCCACATCCTCGACAT CGACTACGTCAACACCGGCGCGTTCATCCGCAACACGCTCAACATCGACAAGAACGCCAATCAGCAGGAAGCGCTGATGG ACATCTACCGGGTCATGCGCCCGGGCGAGCCGCCGACCATCGAAGCGGCGACCGCGCTGTTCCATGGCCTGTTCTTCGAT CCGGAGCGTTTCGATCTCTCGGCCGTCGGCCGCGTGAAGATGAACATGCGCCTCGAACTCGATGCGCCTGATACGATGCG CGTGCTGCGCCGTGAGGACATCCTCGCGGTCGTGAAGACGCTTGTCGATCTGCGCGACGGCAAGGGCGAAATCGACGACA TCGACCACTTGGGCAACCGTCGCGTTCGCTCAGTCGGCGAGCTGATGGAGAACCAGTATCGCGTCGGCCTGCTCCGCATG GAGCGCGCCATCAAGGAGCGCATGTCGTCGGTCGATATCGACACGGTGATGCCGCAGGACCTGATCAACGCCAAGCCGGC AGCGGCTGCGGTGCGCGAGTTCTTCGGTTCGTCCCAGCTCTCGCAGTTCATGGACCAGACGAACCCGCTGTCGGAAATCA CCCACAAGCGCCGTCTCTCGGCTCTTGGACCGGGCGGTCTGACGCGTGAACGCGCGGGCTTCGAAGTCCGCGACGTGCAT CCGACGCACTATGGCCGTATCTGCCCGATTGAGACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTCGCGACGTT CGCGCGCGTGAACAAATACGGCTTCATCGAAAGCCCGTACCGCAAGGTCATCAACGGCCGCGTCACCGACGAGGTTGCCT ACCTCTCCGCCATGGAAGAGATGCGCCATCACGTTGCGCAGGCAAACGCTGCCATCGATGCCAAGGGCAAGATGACGGAA GACCTCGTCACCGTTCGCTACCAGGGCGATGTGATGCTCGTTCCGACCGACAAGGTCGATTACATCGACGTGTCGCCGAA GCAGCTCGTGTCGGTCGCGGCCGCGCTCATCCCGTTCCTTGAGAACGACGACGCCAACCGCGCGCTCATGGGCTCGAACA TGCAGCGTCAGGCCGTGCCGCTGATCAAGGCGGAAGCGCCGCTGGTCGGCACCGGCATGGAAGAGCGCGTGGCGCAGGAC TCGGGCGCTGCCATCGCGGCACGCCGTACGGGCATCGTCGATCAGGTCGACGCAACCCGTATCGTTATCCGCGCAACGGA AGAGCAGGACCCTTCGAAGCCGGGCGTCGACATCTATCGTCTGCGCAAGTTCCAGCGTTCGAACCAGAACACCTGTATCA ACCAGCGTCCGCTGATTAACGTCGGCGATCACGTCAAGGCAGGCGACATCATCGCTGACGGTCCTTCGACCGAACTCGGC GAGCTGGCGCTCGGCAAGAACGTGCTCGTCGCGTTCATGCCGTGGATGGGCTACAACTTCGAAGACTCGATCCTGATGAA CGAGCGCGTCGTCTCCGAAGACGTGTTCACCTCGATCCACATCGAGGAATTCGAGGTCATGGCTCGCGATACGAAGCTCG GACCTGAGGAAATCACGCGCGATATTCCGAACGTCTCGGAAGAAGCGCTGAAGAACCTCGACGAAGCCGGCATCGTCTAC ATCGGCGCCGAAGTCCATCCGGGTGACATTCTGGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGA AAAGCTTCTGCGCGCCATCTTCGGTGAAAAGGCGTCTGACGTTCGCGATACCTCGCTGCGTCTGCCGCCGGGCGTCGCCG GCACGATCGTCGAAGTCCGCGTCTTCAATCGTCACGGCGTCGAGAAAGACGAGCGTGCGATGGCGATCGAGCGCGAAGAG ATCGAGCGTCTCGCAAAAGACCGCGACGACGAGCTTCAGATCCTCGACCGCAACGTCTACGCCCGTCTGAAAGACGCACT GATGGGCAAGGAAGTCGCGAAGGGTCCGAAGAACGCCCGTAAGGGTACGATCATCGACAACGTGATCCTCGACGACATCC CGCGTAGCCAGTGGTGGGAAATCGGTCTTGCCAATGAGAAGGCGCAGGCCGAAGTCGAAGCCATCCAGAAGCAGTACGAA GACGCCAAGAAGGGCCTCGGTCTGCGTTTTGCCGACAAGGTCGACAAGCTGCAGCGCGGTGACGAGCTGCCGCCGGGCGT GATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGATCCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACA AGGGTGTCGTGTCGATGATCGTCCCGTCGGAAGACATGCCGTTCCTCGAAGACGGCACGCCGGTCGACGTCGTTCTGAAC CCGCTCGGCGTGCCGAGCCGCATGAACGTCGGACAGATCCTCGAAACGCATCTTGGCTGGGCGTGCCGCGGCCTTGGCCG CATGATCGACGACGCATTGCATCAGTTCCACGAGAGCGGCCAGGCGCAGGCTCTCCGCGAACAGATGGAGCGCGTTTACG GTCAGGACGTCATCAAGTCGTCGTTGAAAGACGATGAGCTTGTGGGCGTCGCTCAGAACCTGCGCACGGGCGTTCCGATT GCGACGCCGGTGTTCGACGGCGCGCGTGAGAAAGACATCGTCGAAATGCTGCAGCTCGCAGGTTTCGATACGTCGGGCCA GGTGACGCTGTTCGACGGCCGCACGGGCGAGCCGTTCGATCGCAAGGTCACCGTCGGCTACAAGTACGTTCTGAAGCTGC ACCACCTTGTCGACGACAAGATCCATGCTCGTTCGATCGGTCCGTACTCGCTCGTTACCCAGCAGCCGCTGGGCGGTAAG GCGCAGTTCGGCGGCCAGCGCTTCGGCGAAATGGAGGTCTGGGCTCTGGAAGCTTACGGCGCCGCCTACACGCTGCAGGA AATGCTGACCGTGAAGTCGGACGACGTCGCCGGCCGCACCAAGGTCTACGAGGCGATCGTCCGTGGTGACGATGCGTTCG AAGCCGGCGTGCCAGAAAGCTTCAACGTGCTCGTCAAGGAAATGCGCGCGTTGGGTCTCAACGTCGAGCTCGTCAACAGC GAGCTGCCGCAGATCGAAGCAGAAAACGATCAGCCGGAGACGCCCGAGGAACCCCAGGCGCAGCTTCCGCCAGCGGCTGA ATAA Protein sequence : MAQTLTSRKRLRKQFGSIGEVAEMPNLIEVQKASYDDFLMVKEPPGGRPDDFGLQSVFKGVFPISDFAGKSTLEFVSYEF EPPKFDVDECMQRDMTFAAPLKVKLRLIVFDVNEETGSKSIKDVKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSP GVFFDHDRGKTHSSGKLLFAARIIPYRGSWLDFEFDAKDIVYVRIDRRRKLPVTTMLYALGLDDEEILAHFYKHISIKES KRGWKMPFLPEKFRGVTPQSDIADAKTGEVIARAGEKITARRSREIAESGIKEILISAEDLAGRFIAEDIVDMETGKIFA EAGDELDENLLAELKEQKVKEFHILDIDYVNTGAFIRNTLNIDKNANQQEALMDIYRVMRPGEPPTIEAATALFHGLFFD PERFDLSAVGRVKMNMRLELDAPDTMRVLRREDILAVVKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRM ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKVINGRVTDEVAYLSAMEEMRHHVAQANAAIDAKGKMTE DLVTVRYQGDVMLVPTDKVDYIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLIKAEAPLVGTGMEERVAQD SGAAIAARRTGIVDQVDATRIVIRATEEQDPSKPGVDIYRLRKFQRSNQNTCINQRPLINVGDHVKAGDIIADGPSTELG ELALGKNVLVAFMPWMGYNFEDSILMNERVVSEDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVY IGAEVHPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGVEKDERAMAIEREE IERLAKDRDDELQILDRNVYARLKDALMGKEVAKGPKNARKGTIIDNVILDDIPRSQWWEIGLANEKAQAEVEAIQKQYE DAKKGLGLRFADKVDKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSMIVPSEDMPFLEDGTPVDVVLN PLGVPSRMNVGQILETHLGWACRGLGRMIDDALHQFHESGQAQALREQMERVYGQDVIKSSLKDDELVGVAQNLRTGVPI ATPVFDGAREKDIVEMLQLAGFDTSGQVTLFDGRTGEPFDRKVTVGYKYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGK AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDAFEAGVPESFNVLVKEMRALGLNVELVNS ELPQIEAENDQPETPEEPQAQLPPAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 61 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 60 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 60 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 60 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 60 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004676368.1 | RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
