Gene Information

Name : PPS_0129 (PPS_0129)
Accession : YP_004699598.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 140518 - 141021 bp
Length : 504 bp
Strand : -
Note : -

DNA sequence : 
ATGCCCAGCAACGACTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGCTGCATGCCTGGCTGCGCAGCAAGCTGGG
CAATGCCGCCGATGCCGCCGACCTGGCCCAGGACACCTTCGTGCGCCTGCTGCAGCGTCGCGAGCAGCTGCAGTTGAACA
CACCCAGGGCCTTCTTGCGCACGGTTGCGCGCGGGTTGGTGATCGATCACTGGCGCCGCGAGGAGCTGCACAGGGCCTAC
CTCGAGGCACTGGCCCACATGCCGGAAGCACAAACCCCTTCAGCCGAAACCCGCGAGCTGCTGCTGGAGTTGCTGGAGCG
CATAGCGCGCATGCTCGATGGTCTCAAGCCCAAAGTACGTCGCGCGTTCCTGCTGGCCCAATGCGAGGGGCTGAAGCACC
AGGCCATCGCCGAGCAGATGGGGATATCCGTGCGTACCGTGGAGCGTTACATCGCCGATGCGCTCTACCATTGCTACGTC
CTGCGCTATGAAGACGAGTGCTGA

Protein sequence : 
MPSNDSVQTLYSDHHGWLHAWLRSKLGNAADAADLAQDTFVRLLQRREQLQLNTPRAFLRTVARGLVIDHWRREELHRAY
LEALAHMPEAQTPSAETRELLLELLERIARMLDGLKPKVRRAFLLAQCEGLKHQAIAEQMGISVRTVERYIADALYHCYV
LRYEDEC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-30 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_0129 YP_004699598.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 5e-31 47