Gene Information

Name : PPS_3072 (PPS_3072)
Accession : YP_004702501.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 3450594 - 3451103 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
ATGATCGACGCCGCGCCGCCACCGGAGCATAGCCTGCCTGCCCTGTACCGGGAACACCGCGGCTGGCTGGAAACCTGGCT
GCGGCGGCGCATGGGCAATGCCTGGGATGCCGCCGACCTCAGCCAGGATACCTTCCTGCGTATCCTGGCCAGCGCCCAGC
CGCTGGCAGACATTCGCGAACCGCGTGCCTACCTGCTGACCGTGGGCAAGCGCCTGCTGAGCAACTTCCACCAGCGGCGC
AGCCTGGAACAAGCCTACCTCGATGCACTGGCGCAGTTGCCCGAGCAGCATGTGCCCTCGCCAGAGCAGCGTTGGGTACT
GCTGGAAACCCTGCAAGCCCTCGACGAGTTGCTCGACGGCCTCAAGGCGCCGGTACGCAAGGCCTTTCTCTGGAGCCAGC
TGGAGGGCCTGGGCTATGCCGAGATCGGCAAGCGCCTGGGCGTTTGCGAGCGCTCGGTCAAACGCTACATGGCGCAGGCC
TACGAGCATTGCCTGCTGGCCGAACTGTAA

Protein sequence : 
MIDAAPPPEHSLPALYREHRGWLETWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLLTVGKRLLSNFHQRR
SLEQAYLDALAQLPEQHVPSPEQRWVLLETLQALDELLDGLKAPVRKAFLWSQLEGLGYAEIGKRLGVCERSVKRYMAQA
YEHCLLAEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 6e-34 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_3072 YP_004702501.1 ECF subfamily RNA polymerase sigma-24 factor VFG1049 Protein 2e-34 51