Gene Information

Name : PPS_0348 (PPS_0348)
Accession : YP_004699813.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 412588 - 413106 bp
Length : 519 bp
Strand : -
Note : -

DNA sequence :

TTGTCTTCTGCACAGAGCCCACACGCCGATCTGGTCGGTGCGCTGTACCGCGACCATCGCGGCTGGCTGCTCGCCTGGCT
GCAACGCAGCATGGCCTGCCGCCAACGTGCCGAAGACCTGAGCCAGGACACCTTCGTGCGCCTGCTCGGCCGTGCGCAAC
TGGATACGCCCCGCGAACCCCGCGCGTTCCTGGCCGCCGTGGCCAAGGGCCTGATGTTCGACCACTTCCGCCGCGCCGCG
CTGGAACAGGCCTACCTGGCCGAACTGGCCCTGATGCCGGAAGTCGAACAACCTTCCCCGGAAGTGCAACACCTGATCCT
TGAGGACCTCAAGGCCATCGACCGCCTGCTCGGCAAGCTCTCGAGCAAGGCCCGCGCAGCATTCCTGCACAATCGCCTGG
ACGGTATGAGCCATGCCGAAATCGCCGAGCACATGGGGGTTTCGGTTTCGCGGGTGCGCCAGTACATCGCCCAGGGCATG
CGCCAGTGCTACGTGGCCCTGTACGGGGAGCCGACGTGA

Protein sequence :

MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGRAQLDTPREPRAFLAAVAKGLMFDHFRRAA
LEQAYLAELALMPEVEQPSPEVQHLILEDLKAIDRLLGKLSSKARAAFLHNRLDGMSHAEIAEHMGVSVSRVRQYIAQGM
RQCYVALYGEPT

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	3e-28	46

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PPS_0348	YP_004699813.1	RNA polymerase sigma factor	VFG1049	Protein	1e-28	46