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Name : PPS_0901 (PPS_0901) Accession : YP_004700360.1 Strain : Pseudomonas putida S16 Genome accession: NC_015733 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1010419 - 1012281 bp Length : 1863 bp Strand : + Note : - DNA sequence : ATGCTGAACAAATACCCTCTGTGGAAATACGCACTGATCGTGCTGGTACTGGCGATCGGTTTTATTTATTCCGCTCCCAA CCTCTACCCGGATGATCCGGCGGTACAGATCAGTGGTGCCAGTTCGGCGCTGCAGGTGAACCAGGCCGACCTCGACCGCG TCAGCAAGGCGCTGGTCGATGCCAAGATCGCCGTCAAGGGCGTGAGCCTGGGTGAGAAGGGCAGCGGGCTGATCCGCCTG ACCAATCAGGAAGACCAGCTACCAGCCAAGGATGTAGTGCGCAAGGCACTGGGCGATGATTACGTCGTGGCCCTGAACCT GGCCCAGACTACCCCGCAATGGCTGCGCAACCTGGGCGCAAGCCCGATGAAGCTGGGCCTGGACCTGTCAGGTGGTGTGC ACTTCCTGCTGGAAGTGGACATGGACAAGGCCATGAACGCCCGCATGAAAGTCTACGAAGGCGAGGTCAAGACCTTGCTG CGCAAAGAGCGCGTCCGCTACCGCAGCCTGCCGCAGCAGGATGGCGGCATCATGCTGGGCTTCGCTGACGATGCTACCCG CGAACAGGCTCGTGTCCTGATCCGCAAGAATTTCAATGACTTCGACCTGACCACCACCGAGCGCAACGAGCTCGCCGTGC TGCGTCTGGCGCTGACCCAGGCGAAAGTCGCCGAGATCCGCGAATACTCGATCAAGCAGAACCTCACCACCGTCCGCAAC CGGGTCAACGAGCTGGGTGTGGCCGAGCCGCTGGTACAGCGCCAGGGCGCCAACCGCATCGTGGTCGAGCTGCCAGGCGT GCAGGACACTGCCGAAGCCAAGCGTATCCTGGGTAAAACCGCCAACCTGGAGTTCCGCTTCGGTGCCGAGCCAGGCGCAT CCAAGGCCACCACCGAGGTGTTCGAGTTCCGTGAAGGCGGCCGTTCCGCCGCGGTCGAGCGCGGCCTGATCATCACTGGT GACCAGGTAACCGACGCCCAGGCCAGCTTCGACGAACAAGGTCGCCCGCAGGTGAACATCCGCCTGGATGGCCACGGTGG CGAGCTGATGACCCGCGCTACCCGCAGCAACGTCGGCCGCAGCATGGCGGTGATCTTCATCGAGCAGAAGCCGGTCACCC GCTACGTCAAGCAGACCGTCGACGGCGTCGAGAAGGACGTTGCCGTACAGAGCTTCCAGGAAGAGAAGAAGATCATCAGC CTGGCGACCATCCAGTCGCCGCTGGGCAGCCAGTTCCGCATCACCGGCCTGAACGGCCAGGGCGAATCGTCCGAACTGGC CCTGCTGCTGCGTGCCGGTGGCCTGGCTGCGCCGATGTACTTTGCAGAAGAGCGTACCATCGGCCCAAGCCTGGGTGCCG ACAACATCACCAAGGGTATCGATGCGTCGCTGTGGGGCATGCTGTTCGTCTCGCTGTTCATCATCGCCATCTACCGCGCC TTCGGTGTGATCGCCACCATCGCCCTGGCAGGCAACATGGTCCTGCTGCTGGCACTGATGTCGCTGTTGGGCGCCACCCT GACCCTGCCGGGTATTGCCGGTATCGTGTTGACCATGGGTATGGCGGTGGACGCCAACGTGCTGATCTTCTCGCGTATCC GCGAAGAGCTGAACGCCGGCATGTCGGTGCAACGCGCCATTCATGAAGGCTTCAACCGCGCCTACACCGCGATCATCGAC GCCAACCTGACCAGCCTGCTGGTCGGCGGCATCCTGTTCGCCATGGGTACCGGCCCGGTCAAGGGCTTTGCGGTCACCAT GTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCAATGGTCAACCTGACCTGCGGCGGGCGTG ACATCAAGAAGCTGTGGGTTTGA Protein sequence : MLNKYPLWKYALIVLVLAIGFIYSAPNLYPDDPAVQISGASSALQVNQADLDRVSKALVDAKIAVKGVSLGEKGSGLIRL TNQEDQLPAKDVVRKALGDDYVVALNLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMNARMKVYEGEVKTLL RKERVRYRSLPQQDGGIMLGFADDATREQARVLIRKNFNDFDLTTTERNELAVLRLALTQAKVAEIREYSIKQNLTTVRN RVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITG DQVTDAQASFDEQGRPQVNIRLDGHGGELMTRATRSNVGRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFQEEKKIIS LATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRA FGVIATIALAGNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELNAGMSVQRAIHEGFNRAYTAIID ANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLWV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 0.0 | 85 |
