|
Name : sopB (SBG_0939) Accession : YP_004729822.1 Strain : Salmonella bongori NCTC 12419 Genome accession: NC_015761 Putative virulence/resistance : Virulence Product : cell invasion protein Function : - COG functional category : - COG ID : - EC number : - Position : 1045603 - 1047285 bp Length : 1683 bp Strand : - Note : - DNA sequence : ATGCAAATACAGAGTTTCTGTCATTCAGTCTCTTTGACAGCCCAGGAGGCATTTAAAAGCCTACAAGCCATTTTCTACAA TGGGATGCAGATCCTCTCTGGTCAGGGAACCGCACCGCCTAAAGCTCCCGGTGCTCGCCTGGAAATCTTTGTCCTGCGAA GCTCCGGTGAGACATGGGGAAATTATTTACAGGGGCAGGAGGCGTCCAGCCAGTCGCTACATAACCTCTATGATTTTCAG CGTGTGCTTCTGACTGTTGCAGCCACCGTTTTGGGTAAACAGGACCCGGTGCTGACGTCAATGGCAAACCACATGGTGTT AGCGAAAGTTAAAGCGGATCGACCGGCTACAAAACAGGAAGAAACCGCCGCGAAGGAATTGAAAAAAAATCTTATCGCTC TGATTGCCACACGCTATCAGCAAAATGGCCTGCCTGCACAAGAGGCTCATCAGGTTGCAGTAGCCGCGTTCAGGGAAGCT CAGGTCCAGTATCTTAATAATCAGCCCTGGCAGACCATAAAAAATACGCTCACGCATAACGGATATCGCTATACCAATAC GCAGTGCCCTGCCGCCGACATGAAAATCGGCGCACAGGATATTTTTCCCAACGCCTATCAGGGAAAAGGCGTATGCAGTA GTGATACCACGAATACCCAGCATGCTACTAACCTATGGATGTCCACGTTAAGCGTTAATGAGAATGGTAAAGATAAAACG CTTTTTTGCGGGATACGTCATGGTGTCCTCTCTCCCTATCACGTAAAAGACCCGATTCTGCGTCAGGTTGGCGCCGAAAA CAGAGCCAGAGAAGTGTTAACTGCAGCGCTTTTTAGTCAACCCGCGTTGCTTACAAAAGCCTTACAGGACGAAGTCGTCA GTCTGCGACTGGTATCTGTCGGATTGCTTACCACCTCGACTATTGTTGGTAATGAAGACGCTATGGTCCAGGATCAAATG CGCGCGTGGCAATCGTTGACCCAGCCGGGAAATGTGATTCATTTAAATATCCGCAATAAAGAGGGTGAGCTGCGAACGGT AAAAATAAAGCCGGAGATCGCTGCTTTTAATACGGGTGTCAACGAGCTGACGCTCAAACTTGGCTTAGGACATCAGGCCT CGGATAACTATAATATCGGGGCATTACATCAGTTATTAGGCCATGACTTACGTCCTGAAGCCCCCCCTGGCGGTTGGGTT GGTGAATGGCTGGCGCAACATCCGGATAACCACGCCGTCGTAAATACTCTTGTACGGCAGATTAAGGATATCTGGAATAG CAAGCTTCATCATACAGACGGCAACGAACCCTATAAGTTTGCGCAACGTCTTGCAATACTAGCCCATGAAATCGGCGCGG TTCCTGCCTGGAATTGCAAAAGCGGTAAAGATCGTACGGGTATGCAGGATGCTGAAATTAAGCGGGAGGTTATCTCTCTC CATCAGAAGGCTACGCTGACTCCCCTTGCGAGCCTTCCGGATAGTGATGGACAGGAAATTTTTCAAAAAGTATTACTCAA TAGCGGCAATCTGGAAATTCAAAAACAAAATACAGGCGGGGCGGGAAACAAAGTCTTGAAAAACTTACCGCCAGAAGTGC TCAATCTTTCTTATCAAAGACGCATTGGGGATGCCAATATATGGCAATTGGTAAAGGGCCTTTCTTCATTAGTCACCTCC TGA Protein sequence : MQIQSFCHSVSLTAQEAFKSLQAIFYNGMQILSGQGTAPPKAPGARLEIFVLRSSGETWGNYLQGQEASSQSLHNLYDFQ RVLLTVAATVLGKQDPVLTSMANHMVLAKVKADRPATKQEETAAKELKKNLIALIATRYQQNGLPAQEAHQVAVAAFREA QVQYLNNQPWQTIKNTLTHNGYRYTNTQCPAADMKIGAQDIFPNAYQGKGVCSSDTTNTQHATNLWMSTLSVNENGKDKT LFCGIRHGVLSPYHVKDPILRQVGAENRAREVLTAALFSQPALLTKALQDEVVSLRLVSVGLLTTSTIVGNEDAMVQDQM RAWQSLTQPGNVIHLNIRNKEGELRTVKIKPEIAAFNTGVNELTLKLGLGHQASDNYNIGALHQLLGHDLRPEAPPGGWV GEWLAQHPDNHAVVNTLVRQIKDIWNSKLHHTDGNEPYKFAQRLAILAHEIGAVPAWNCKSGKDRTGMQDAEIKREVISL HQKATLTPLASLPDSDGQEIFQKVLLNSGNLEIQKQNTGGAGNKVLKNLPPEVLNLSYQRRIGDANIWQLVKGLSSLVTS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sopB | AAK27357.1 | SopB | Virulence | SPI-5 | Protein | 0.0 | 100 |
| sigD | NP_455588.1 | cell invasion protein | Virulence | SPI-5 | Protein | 0.0 | 78 |
| sopB | YP_216030.1 | outer protein | Virulence | SPI-5 | Protein | 0.0 | 78 |
| sopB | NP_460064.1 | secreted effector protein | Virulence | SPI-5 | Protein | 0.0 | 78 |
| sopB | AAK27355.1 | SopB | Virulence | SPI-5 | Protein | 4e-151 | 77 |
| sopB | AAC33723.1 | SopB | Virulence | SPI-5 | Protein | 0.0 | 77 |
| sopB | AAK27356.1 | SopB | Virulence | SPI-5 | Protein | 6e-147 | 75 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sopB | YP_004729822.1 | cell invasion protein | VFG0465 | Protein | 0.0 | 78 |
| sopB | YP_004729822.1 | cell invasion protein | VFG0992 | Protein | 1e-81 | 46 |
