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Name : rpoB (zobellia_644) Accession : YP_004735106.1 Strain : Zobellia galactanivorans DsiJT Genome accession: NC_015844 Putative virulence/resistance : Unknown Product : DNA-dependent RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 802542 - 806351 bp Length : 3810 bp Strand : - Note : The beta subunit of RNA polymerase, in association with the beta subunit, omega subunit and the two alpha subunits, forms the polymerase core. The beta subunit possesses the polymerase activity; It contains seven domains. The domains 1 and 2 form the two DNA sequence : ATGTTCACACAACAGACTGAGAGAATAAATTTTGCATCCGCTAAGAACACGCCGGATTATCCGGACTTCTTGGACATTCA GATTAAATCTTTTCAAGACTTTTTTCAGCTTGAGACAAAATCTGACGAAAGAGGCAATGAAGGCTTGTACAACACCTTCA TGGAAAACTTCCCTATTACGGACACCAGAAACCAGTTCGTACTTGAATTTTTAGATTACTTCATAGATCCGCCTAGATAT TCGATACAAGAATGTATCGAGCGAGGTCTTACTTATAGTGTCCCCTTAAAGGCACGATTAAAATTATACTGTACCGATCC CGAGCACGAAGATTTCGAAACTATCGTGCAAGACGTGTATTTGGGTACCATTCCATATATGACGCCCAGTGGTACGTTTG TTATTAACGGTGCAGAAAGGGTTGTAGTATCTCAGTTACACCGTTCTCCTGGTGTTTTCTTCGGTCAGTCATTTCACGCG AATGGAACTAAGCTTTATTCTGCCAGGGTAATACCGTTCAAAGGTTCGTGGATCGAATTTGCTACAGATATTAACGGAGT GATGTATGCGTACATCGACCGTAAAAAGAAATTACCCGTAACGACCCTTTTTAGAGCCATCGGTTTTGAAAGGGATAAAG ATATTCTTGAGATTTTTGACCTTTCTGAAGAGGTGAAGGTATCTAATGCGGGACTTAAAAAAGTTTTAGGCCGTAAATTG GCTGCAAGGGTATTGAACACTTGGCACGAAGATTTTGTTGATGAAGATACGGGCGAGGTTGTTTCTATCGAAAGGAACGA AATCATTCTTGACCGTGATACCGTGTTGGAGAAAGATCATATTGCCGAAATCTTGGATGCGGACGTGAAAACTATCCTGC TTCATAAAGAGAACAATGCGCAGTCTGACTATGCCATCATTCACAATACGCTTCAGAAGGATCCAACCAACTCTGAAAAA GAAGCGGTAGAGCATATCTATCGTCAATTGCGTAATGCCGAACCGCCCGATGAGGAAACGGCTCGTGGTATTATCGATAA ACTGTTCTTTTCGGATCAACGTTACAACCTAGGTGAGGTTGGGCGTTACCGTATGAATAAGAAATTACAGTTGGATATTG GAATGGACAAGCAGGTGTTGACCAAGGAAGATATCATAACTATTATTAAATATTTGATCGAACTTATCAATTCCAAAGCG GAGATTGATGATATCGATCACCTTTCGAACCGTCGTGTACGTACTGTTGGTGAACAATTGTCATCTCAGTTCGGCGTAGG TCTTGCCCGTATGGCCAGAACTATCCGTGAGCGTATGAACGTTCGTGATAACGAAGTGTTTACCCCGATCGATTTGATTA ATGCAAAGACCTTGTCTTCCGTTATTAATTCATTCTTTGGAACGAACCAGTTGTCCCAATTTATGGACCAAACGAATCCA TTGGCCGAGATTACGCACAAACGAAGATTGTCGGCACTTGGGCCAGGTGGTCTTTCGAGAGAGCGTGCCGGTTTTGAGGT TCGTGACGTTCACTATACACACTACGGTAGACTTTGTCCTATTGAAACTCCTGAAGGTCCGAACATTGGTTTGATATCTT CCTTATCGGTTTTTGCCAAGGTAAACCCTATGGGCTTCCTGGAAACACCTTACCGTAAGGTTGACAATGCCAAGGTCAAT ACAAAAGAGTATGTGTACCTAAGTGCGGAAGAAGAGGAAGGAATGAAAATTGCCCAGGCGAACATTCCGTTGAAAGAAGA CGGTCAGATCGATACCGATAAGGTTATTGCCCGTGAAGAGGGCGATTTCCCGGTAGTAGATCCAATTGAAATAAACTATA CTGACGTTGCTCCTAATCAGATTGCATCTATTTCGGCATCACTTATTCCCTTCTTGGAGCATGATGATGCGAACCGTGCA CTGATGGGCTCAAACATGATGCGCCAAGCCGTGCCATTGTTGAAGCCTCAGTCCCCAATTGTGGGTACTGGTCTTGAGCG TCAGGTGGCATCCGATTCTAGGGTACTGATCAACGCTGAAGGTGATGGTACTATAGAGTATGTAGATGCTAAGATGATTA CTGTAAAGTACGATCGTACCGATGCTGAGCGTTTGGTCAGTTTTGAAGATGATTCGAAGAGTTACAACTTGGTCAAGTTT AGAAAGACCAACCAAGGTACCAGTATCAACCTAAAACCTATTGTTAGAAGAGGTGATAAGGTTAAGAAAGGTCAGGTACT TTGTGAAGGCTATGCTACGGAAAAAGGTGAATTGGCCCTAGGTCGTAACCTTACTGTTGCCTTTATGCCTTGGAAAGGAT ACAACTTTGAAGATGCGATCGTAATTTCTGAGAAAGTAGTTCGCGAAGATATATTTACCTCAATTCACGTAGATGAATAT TCTTTAGAGGTTAGGGATACTAAATTAGGTGCCGAGGAATTGACCCATGATATTCCGAACGTATCTGAAGAGGCTACCAA AGATTTGGACGAGAACGGTATGATCCGTATCGGGGCCGAAGTGAAGCCTGGTGATATCTTGATCGGTAAGATTACTCCTA AAGGGGAATCTGATCCGACTCCAGAGGAGAAATTACTTAGAGCCATTTTTGGTGATAAAGCCGGTGACGTTAAGGATGCT TCTTTAAAGGCATCGCCTTCATTGCGTGGTGTGGTTATCGACAAAAAACTGTTCTCCCGATCAGTTAAGGATAAGCGTAA GCGTTCTGAGGATAAGGAAGAGCTTAACAAGTTGGAATTGGAGTACGAAGTGAAATTTCAAGAGTTGAAAGACATCTTGA TCGAGAAGCTTTTTACTTTGATCAATGGTAAGACATCGCAAGGTGTGTTGAACGATTTGGGTGAGGAAGTATTGCCAAAA GGTAAGAAGTACACCTTGAAAATGTTGAACGCGGTTGATGATTTCGCTCACTTGGTAGGCGGTAGCTGGACCATGGATAA GGATACGAACGAAGCCGTTGCCGATTTGCTCCACAACTATAAGATCAAGTTGAACGACCTTCAGGGTAACCTAAGAAGGG ATAAGTTTACGATTTCGGTAGGTGATGAATTGCCAGCCGGAATTATGAAATTGGCCAAGGTTTATATTGCCAAAAAACGT AAGCTTAAAGTAGGGGATAAAATGGCAGGACGTCACGGAAACAAAGGTATCGTTTCTCGTATCGTTCGTCAAGAGGATAT GCCGTTCTTGGAAGACGGAACGCCTGTGGATATCGTGTTGAACCCGTTAGGGGTGCCTTCTCGTATGAACATCGGTCAGA TCTATGAAACCGTATTGGGTTGGGCAGGTCTTAAATTGGGTAAAAAATATGCTACCCCAATTTTCGATGGGGCCACTTTG GATCAGATCAATGAATATACCGATCAAGCGGGTATACCAAGATTCGGTCATACCTACCTTTATGATGGTGGTACCGGTAA ACGTTTTGATCAACCGGCAACCGTTGGTGTGATCTATATGTTGAAACTAGGCCACATGGTAGACGATAAGATGCACGCAC GTTCTATTGGGCCATACTCATTGATTACGCAACAACCATTAGGTGGTAAAGCACAATTTGGTGGTCAGCGTTTTGGTGAG ATGGAGGTTTGGGCATTGGAAGCTTATGGTGCTTCGGCCACACTTCGTGAAATATTGACCGTTAAGTCGGATGATGTTAT CGGAAGGGCCAAGACCTATGAATCAATAGTCAAAGGCGAAACCATGCCAGAGCCCGGTTTACCGGAATCTTTCAACGTAT TGATGCACGAACTTAAAGGTTTGGGCTTAGATATCCGTTTGGAAGAATAG Protein sequence : MFTQQTERINFASAKNTPDYPDFLDIQIKSFQDFFQLETKSDERGNEGLYNTFMENFPITDTRNQFVLEFLDYFIDPPRY SIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHA NGTKLYSARVIPFKGSWIEFATDINGVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEVKVSNAGLKKVLGRKL AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTVLEKDHIAEILDADVKTILLHKENNAQSDYAIIHNTLQKDPTNSEK EAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEVGRYRMNKKLQLDIGMDKQVLTKEDIITIIKYLIELINSKA EIDDIDHLSNRRVRTVGEQLSSQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAKVNPMGFLETPYRKVDNAKVN TKEYVYLSAEEEEGMKIAQANIPLKEDGQIDTDKVIAREEGDFPVVDPIEINYTDVAPNQIASISASLIPFLEHDDANRA LMGSNMMRQAVPLLKPQSPIVGTGLERQVASDSRVLINAEGDGTIEYVDAKMITVKYDRTDAERLVSFEDDSKSYNLVKF RKTNQGTSINLKPIVRRGDKVKKGQVLCEGYATEKGELALGRNLTVAFMPWKGYNFEDAIVISEKVVREDIFTSIHVDEY SLEVRDTKLGAEELTHDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDA SLKASPSLRGVVIDKKLFSRSVKDKRKRSEDKEELNKLELEYEVKFQELKDILIEKLFTLINGKTSQGVLNDLGEEVLPK GKKYTLKMLNAVDDFAHLVGGSWTMDKDTNEAVADLLHNYKIKLNDLQGNLRRDKFTISVGDELPAGIMKLAKVYIAKKR KLKVGDKMAGRHGNKGIVSRIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGLKLGKKYATPIFDGATL DQINEYTDQAGIPRFGHTYLYDGGTGKRFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE MEVWALEAYGASATLREILTVKSDDVIGRAKTYESIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 44 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 46 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 44 |
| rpoB | YP_004735106.1 | DNA-dependent RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 44 |
