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Name : Ccan_16860 (Ccan_16860) Accession : YP_004740909.1 Strain : Capnocytophaga canimorsus Cc5 Genome accession: NC_015846 Putative virulence/resistance : Unknown Product : RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1821615 - 1825046 bp Length : 3432 bp Strand : - Note : Short=RNAP subunit beta;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta; DNA-DIRECTED RNA POLYMERASE BETA CHAIN (PTHR20856:SF3); Undefined Gene3D domain (G3DSA:2.40.50.100); DNA-directed (PTHR20856); beta and beta-prime DNA sequence : ATGACTTCCAGCGGAACATTCGTAATTAATGGTGCTGAACGCGTTATTGTTTCTCAATTGCATCGTTCGCCAGGGGTTTT CTTTGGGCAGTCATTCCACGCTAACGGAACCAAGCTGTATTCAGCAAGAATCATTCCGTTTAAGGGATCGTGGATTGAAT TCGCAACAGACATTAACAATGTGATGTATGCGTACATTGATAGAAAGAAAAAACTTCCTGTGACAACGCTTTTCCGTGCG ATTGGCTTTGAACGGGATAAAGATATATTGGAAATTTTTGATTTGGCAGAAGAAATCAAAGTTTCCAAAACAGGATTGAA AAAATATTTAGGACGTCGATTGGCGGCTCGTGTGCTAAATACTTGGCACGAAGATTTCGTAGATGAAGATACCGGAGAGG TAGTATCTATCGAGCGTAATGAAATTATTTTGGATAGGGACACCATATTAGATAAAGATAATATTGAGGAAATCGTTGAA GCAGACGTTAAAACTATTCTTTTACATAAAGAAGATAACCACGCTGTTGATTATACCATTATCCATAACACATTACAGAA AGATCCAACAAACTCTGAAAAAGAGGCAGTTGAACATATTTATCGTCAGCTTCGTAATGCAGAACCACCCGATGAGGAAA CTGCTCGTGGTATTATTGATAAATTGTTCTTCTCTGACCAACGTTACAACTTAGGTGATGTAGGTCGTTACCGAATGAAC AAAAAATTAGGGTTAGATATTCCTGAAGATAAGCAGGTGCTAACCAAAGAAGATATCATAACCATTGTAAAATATCTGAT TGAGTTGATTAACTCCAAAGCAGAGATTGATGATATTGATCACCTTTCAAACCGCCGTGTGCGTACAGTAGGTGAGCAAC TTTCCGCTCAGTTTGGTGTGGGGCTTTCTCGTATGGCACGTACAATTCGTGAACGTATGAATGTTCGTGATAATGAGGTG TTTACTCCTATTGATTTGATCAATGCTAAAACATTATCTTCTGTAATTAACTCATTCTTTGGGACAAATCAGCTTTCTCA GTTTATGGATCAAACCAATCCATTGGCTGAAATTACACATAAGCGAAGATTATCTGCCTTAGGACCTGGAGGACTTTCGC GTGAGCGTGCCGGTTTTGAGGTTCGTGACGTTCACTATACACACTATGGTCGTCTATGTCCGATCGAAACTCCTGAGGGA CCAAATATCGGTTTGATTTCTTCCTTAGCCGTGTTCTCAAAAGTAAATGGAATGGGCTTTATTGAAACACCTTATCGCAG AGTTGTTGATGGAAAGGTTGATTTGACTGATATGACCTATCTTAGTGCCGAAGAAGAAGAAGGCAAAATGATTGGTATGG CAAATATCAATATGGATGACAATGGGGTGATTCTTGATGAAAAAGTGGTTGTTAAAGAAGAAGGAGATTTTCCAGTTATT GATCCTAATCAAGTAGATTTCATTGACGTGGCTCCGAATCAAATTGCCTCTATTTCAGCTTCATTAATTCCTTTCTTGGA GCACGATGATGCGAACCGTGCGTTGATGGGCTCGAATATGATGCGTCAGGCAGTTCCTTTATTGAAACCTGAATCTCCGA TTGTTGGGACTGGGTTGGAGCGCCGTGTAGCCTCTGATTCACGAGTACTGATGAATGCCGAAGGAGAAGGAACCGTTGAT TATGTAGATGCAGATAAAATTATCATCACTTATGACAGAACAGACGATCAGCGTTTGGTAAGTTTTGAAGAAGATGCCAA AACCTATGATTTGATAAAATTCCGTAAAACCAACCAAGGTACTTGTATCAACCTTAAACCAATCGTTCGTAAAGGTGATC GCGTAACTAAAGGACAGGTACTTTGTGAAGGATATGCCACCCAGCAAGGTGAGTTAGCTTTGGGTAGAAATATGAAAGTG GCTTTTATGCCTTGGAAAGGATATAACTTTGAAGATGCGATAGTAATTTCTGAACGTGTGGTTCGTGAAGACATATTCAC CTCCATTCATATTGACGAATATTCGATGGATGTTCGTGATACCAAATTAGGGGCTGAGGAACTTACCAATGATATCCCGA ATGTTTCTGAAGATGCAACCAAGGATTTAGATGAAAACGGTATGATTCGTATTGGTGCTGAGGTTCGCCCTGGTGATATT CTTATTGGTAAAATCACTCCTAAGGGAGAATCTGACCCAACGCCAGAAGAAAAGTTACTTCGTGCTATATTCGGAGACAA AGCAGGTGATGTGAAAGATGCATCACTTAAAGCCTCACCTTCACTTCACGGAGTGGTAATTGATAAAAAATTGTTCTCTC GTGCCATTAAAGACAAACGCAAACGAGGTAAAGATAAAGAAGAAATAGCTACACTTGAAGCTAGTTATAGTGCTAAATTC CAAGTGCTTAAAGATAAATTGGTAGATAAGCTATTTACTTTGGTTAACGGAAAAACAGCACAGGGGGTGGTTAATGATTT GGGCGAAGAAATCATTCCGAAAGGAAAGAAATATACCCAAAAAATGTTACACGCCATTGAGGACTATGCCCACTTGGTTT CTGGGGGATGGACATCAGATGACCGAGCTAATGCCTTGATTGATGACTTGTTGCATAATTATAAAATCAAGTTAAACGAT TTACAAGGTGCTTTACGTCGTGATAAATTTACAATCTCTGTGGGTGACGAATTACCTGCTGGGGTAATGAAGTTGGCTAA GATTTACATTGCTAAAAAACGTAAACTCAAAGTAGGGGATAAAATGGCAGGTCGTCACGGAAATAAAGGTATTGTTGCCC GTATTGTACGTGATGAAGATATGCCTTTCTTGGAAGACGGAACACCTGTGGATATTGTACTAAACCCACTTGGGGTACCT TCACGTATGAATATCGGTCAGATTTATGAAACGGTGCTTGGTTGGGCAGGTCAGAAATTAGGTCAGAAATATGCTACCCC AATCTTTGATGGAGCTTCGTTAGAGCAAATTAACGAACTTACTGATAAAGCAGGGGTTCCACGTTTTGGGCATACGTATT TGTACGATGGTGGAACAGGTGAGCGTTTTGACCAACCAGCAACAGTTGGGGTTATTTATATGATTAAACTCGGACATATG ATTGATGACAAGATGCACGCACGTTCTATCGGACCTTATTCACTTATTACGCAGCAACCTCTGGGAGGTAAAGCTCAGTT TGGAGGTCAGCGTTTTGGAGAGATGGAGGTTTGGGCTTTGGAGGCTTATGGGGCTTCAAGTACCTTGCGTGAAATCTTAA CAGTGAAATCTGACGATGTTATCGGAAGAGCTAAAACGTATGAGGCTATCGTTAAAGGTGAGCCAATGCCTGAACCAGGA TTGCCAGAGTCATTCAATGTATTGATGCACGAGCTTAAAGGTCTTGGTTTAGATATTCGTTTGGAAGAATAA Protein sequence : MTSSGTFVINGAERVIVSQLHRSPGVFFGQSFHANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLFRA IGFERDKDILEIFDLAEEIKVSKTGLKKYLGRRLAARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNIEEIVE ADVKTILLHKEDNHAVDYTIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGDVGRYRMN KKLGLDIPEDKQVLTKEDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQLSAQFGVGLSRMARTIRERMNVRDNEV FTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEG PNIGLISSLAVFSKVNGMGFIETPYRRVVDGKVDLTDMTYLSAEEEEGKMIGMANINMDDNGVILDEKVVVKEEGDFPVI DPNQVDFIDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPESPIVGTGLERRVASDSRVLMNAEGEGTVD YVDADKIIITYDRTDDQRLVSFEEDAKTYDLIKFRKTNQGTCINLKPIVRKGDRVTKGQVLCEGYATQQGELALGRNMKV AFMPWKGYNFEDAIVISERVVREDIFTSIHIDEYSMDVRDTKLGAEELTNDIPNVSEDATKDLDENGMIRIGAEVRPGDI LIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLHGVVIDKKLFSRAIKDKRKRGKDKEEIATLEASYSAKF QVLKDKLVDKLFTLVNGKTAQGVVNDLGEEIIPKGKKYTQKMLHAIEDYAHLVSGGWTSDDRANALIDDLLHNYKIKLND LQGALRRDKFTISVGDELPAGVMKLAKIYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLNPLGVP SRMNIGQIYETVLGWAGQKLGQKYATPIFDGASLEQINELTDKAGVPRFGHTYLYDGGTGERFDQPATVGVIYMIKLGHM IDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGEPMPEPG LPESFNVLMHELKGLGLDIRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 47 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 46 |
| Ccan_16860 | YP_004740909.1 | RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
