Gene Information

Name : CFU_0183 (CFU_0183)
Accession : YP_004750844.1
Strain : Collimonas fungivorans Ter331
Genome accession: NC_015856
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 216271 - 216951 bp
Length : 681 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTATCCTCGTCATCGAAGACGATCCCAAGACCGGCGCCTACCTCAAGAAAGGTTTGCGCGAATCCGGCTATGCGGT
CGACCTGGTCCGCAACGGCAGCGACGGCCTGCACATGGCGCTGGAAAACAGCTACGACCTGGTGGTGCTGGACGTCATGC
TGCCCGGCACCGACGGCTGGAAAATCATGGGCGCCCTGCGCGCCAAACGCGATCTGCCGGTGATCTTCCTGACCGCGCGC
GACCACGTCAACGACCGCATACGCGGCCTCGAACTGGGCGCCGACGATTACCTGGTCAAGCCGTTTTCGTTCACCGAACT
GCTGCTGCGCATCCGCACGCTGTTGCGGCGCGGCGTGGTGCGCGAATCGCACGAGCTGGATTTTTTCCAGGTGGCCGACC
TGCAGCTCGACCTGCTGCGCCGCAAGGTCACGCGTCAAGGTACGGACATCGTGCTCACCAACAAGGAATTCCTGCTGCTG
CACCTGCTGGTCAAGCGCAAGGGCGAGCCGCTGTCGCGCACCGTCATCGCATCGGAAGTGTGGGACATGAATTTCGACAG
CGACACCAATGTAGTCGACGTCGCCATCAAGCGCCTGCGCGCCAAGATCGACAACCCCTTCGAGCATAAACTGATACACA
CGGTACGCAGCATCGGCTACATGTTTGCGGAAGATCCATGA

Protein sequence : 
MSILVIEDDPKTGAYLKKGLRESGYAVDLVRNGSDGLHMALENSYDLVVLDVMLPGTDGWKIMGALRAKRDLPVIFLTAR
DHVNDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVVRESHELDFFQVADLQLDLLRRKVTRQGTDIVLTNKEFLLL
HLLVKRKGEPLSRTVIASEVWDMNFDSDTNVVDVAIKRLRAKIDNPFEHKLIHTVRSIGYMFAEDP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-54 55
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-53 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0125 Protein 7e-63 61
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0083 Protein 5e-59 60
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0111 Protein 4e-57 58
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0308 Protein 4e-54 58
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0638 Protein 4e-51 58
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0197 Protein 5e-61 57
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator BAC0347 Protein 5e-48 54
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 2e-30 41
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 2e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator VFG0596 Protein 1e-54 55
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator VFG1389 Protein 1e-30 43
CFU_0183 YP_004750844.1 DNA-binding heavy metal response regulator VFG1390 Protein 5e-33 42