Gene Information

Name : Cycma_1001 (Cycma_1001)
Accession : YP_004773004.1
Strain : Cyclobacterium marinum DSM 745
Genome accession: NC_015914
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 1176474 - 1177190 bp
Length : 717 bp
Strand : -
Note : PFAM: ABC transporter; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: dfe:Dfer_3760 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: macrolide e

DNA sequence : 
ATGCCAGAAATCATAAAAACCAAAGAGATACGTAAGGTTTACAGAATGGGAACCGAGGAAGTGAAAGCACTCAAATCGGT
AAGCATGTGCGTAAACAGAGGTGAATATGTGGCTTTTATGGGGCCTTCAGGATCAGGGAAGTCGACATTAATGAATATTA
TAGGGTGTTTGGATACTCCAAGCTCAGGACAATACATTCTTAATAGCAAGGATGTAAGTGATATGAGTGAAGATGAGCTT
GCAGAAATCAGAAATAAGGAGATAGGTTTTGTTTTTCAAACCTTTAATCTACTGCCAAGGGCTACTTGCTTAGAGAATGT
TGCTTTACCTTTGATTTATGCGGGTTACAATAAAACGGATAGAGAAGAGAAGGCTTTCTTATCTCTAAAAAGTGTGGGCT
TAGATGATAGAATTCATCACAAACCCAATGAGTTGTCAGGTGGTCAGAGGCAAAGGGTAGCCATTGCCAGGGCTTTGGTA
AATGATCCCAGCATTATTTTGGCCGATGAACCTACAGGTAATTTGGACAGTAAGACGTCTTATGAAATCATGGATCTTTT
TCATGTTTTGCACCAAAAAGGCAATACGATTATCATGGTAACTCATGAGGATGATATAGCACATTATGCGCATCGAATCA
TCAGACTTAGAGATGGTCTTATAGAATCTGATGAACGAAACCCCAATCCAACGGTGGTTGACAAAACAATTATTTGA

Protein sequence : 
MPEIIKTKEIRKVYRMGTEEVKALKSVSMCVNRGEYVAFMGPSGSGKSTLMNIIGCLDTPSSGQYILNSKDVSDMSEDEL
AEIRNKEIGFVFQTFNLLPRATCLENVALPLIYAGYNKTDREEKAFLSLKSVGLDDRIHHKPNELSGGQRQRVAIARALV
NDPSIILADEPTGNLDSKTSYEIMDLFHVLHQKGNTIIMVTHEDDIAHYAHRIIRLRDGLIESDERNPNPTVVDKTII

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-33 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cycma_1001 YP_004773004.1 ABC transporter NC_012469.1.7686878. Protein 1e-59 59
Cycma_1001 YP_004773004.1 ABC transporter NC_008702.1.4606598. Protein 7e-51 49
Cycma_1001 YP_004773004.1 ABC transporter CP001581.1.gene598.p Protein 3e-48 48
Cycma_1001 YP_004773004.1 ABC transporter CP001581.1.gene798.p Protein 5e-42 45