Gene Information

Name : BurJV3_2358 (BurJV3_2358)
Accession : YP_004792905.1
Strain : Stenotrophomonas maltophilia JV3
Genome accession: NC_015947
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2595776 - 2596294 bp
Length : 519 bp
Strand : +
Note : KEGG: sml:Smlt2848 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2

DNA sequence : 
ATGGCCGTGCCCGCCGCCTCCAGCACTGCGCTGGCGGGGTTCTACCGCGAACACCATGGCTGGCTGCTGGGCTGGCTGCG
CCGCCGCACCCACAACGCCGACTGCGCTGCCGACCTGACCCAGGACACCTTCCTGCGCCTGCTCAGCCGTCGCGTCGATC
CGTCCGAACTGCGGCTGCCACGCGCCTATCTCAGCACCATCGCGCACGCCCTGCTGGTCAACCACTGGCAGCGCGCGGAC
CTGGAGCGTGCCTACCTGGCCGCACTGGCCGCGCAACCGGAGCCAGTGCATCCATCGGCGGAAGAACGCACGCAGGCACT
GCAACTGCTGCACGCCATCGCCGACATGCTGTCCGGCCTGGCCGAACGCCCACGCCGTGCGTTCCTGCTGGCACGACTGT
CTGGCCTGGGCTATGCGGAGATCGGCCAACAACTGGGCGTGTCCGAGCGCATGGTCAAGAAGTACATGGCGCAGGCCATG
CTGCACTGCCTGCGCCTGTCCGGCGATGCTGCGGCATGA

Protein sequence : 
MAVPAASSTALAGFYREHHGWLLGWLRRRTHNADCAADLTQDTFLRLLSRRVDPSELRLPRAYLSTIAHALLVNHWQRAD
LERAYLAALAAQPEPVHPSAEERTQALQLLHAIADMLSGLAERPRRAFLLARLSGLGYAEIGQQLGVSERMVKKYMAQAM
LHCLRLSGDAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 7e-32 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BurJV3_2358 YP_004792905.1 ECF subfamily RNA polymerase sigma-24 subunit VFG1049 Protein 3e-32 46