|
Name : rpoB (SLG_15570) Accession : YP_004834689.1 Strain : Sphingobium sp. SYK-6 Genome accession: NC_015976 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1703256 - 1707431 bp Length : 4176 bp Strand : - Note : protein synonym:RNA polymerase subunit beta; protein synonym:RNAP subunit beta; protein synonym:transcriptase subunit beta DNA sequence : ATGGCAACCAAGGCTCTCCCCCCCTCCACGGCCGGCGAAAGCGCCAAGAAGCGCATCCGCAAGGTTTTCGGCAACATCCA CGAAGTGGTGCAGATGCCGAATCTGATCGAAGTGCAGCGGGAGAGCTATGAGCAGTTCCTGCGCTCCAATCCCGCGATCG GCTATGTGTCCGGCCTGGAGAAGACCCTGCGCAGCGTCTTCCCGATCCGCGACTTCGCCGGCACGGCGGAGCTGGACTTC GTCCATTACGAACTCGAAGATCCCAAGTACGACACCGAGGAGTGCCGTCAGCGCGGCATCACATATGCGGCCCCGATGCG GGTGACGCTTCGCCTGATCGTGTTCGAAGTGGACGCCGACACCGAGACCCGCTCCGTGCTCGATATCAAGGAGCAGGATG TCTACATGGGCGACATGCCGCTCATGACGGGCAACGGCACCTTCATCATCAACGGCACCGAGCGCGTCATCGTGTCCCAG ATGCACCGCTCGCCAGGCGTGCTCTTCGACCATGACCGTGGCAAAACGCACTCGTCCGGCAAGTATCTCTTCGCTGCGCG CGTGATCCCTTATCGCGGTTCCTGGCTGGACTTCGAGTTCGACGCCAAGGACATCGTGAATGTCCGCATCGACCGCAAGC GCAAGCTGCCGGTGACGGCGCTGCTCTATGCGCTCGGCCTGAATAGCGAGGATATCCTCGGCGAGTTCTACAACAAGATC ACTTATGTCCGCGGCCAGAACGGCTGGCAGATCCCCTACACGGCGGAAGCCTGGCGCGGCCAGAAGCCGATGTTCGACAT CGTCGATGCCAAGACCGGTGAGGTGGTGTTCGCTGCGGGCCAGAAGATCAGTCCGCGCGCGGCACTCAAGGCGCAGAAGG ACGGCCTTGAATCGCTCGTCATCCCGACCGAGGAAATCTATGGCCGCTACAGCGCCTATGACCTCATCAATGAGACCACT GGCGCGATCTATATCGAAGCGGGCGACGAGGTTTCCCCCGAGAATCTCGCCAAGCTGGATGAAGCCGGGATCGATCGCAT CGAGCTGCTCGATATCGATCACGTCAACACGGGCCCGTGGATCCGCAACACGCTGAAGGTCGACAAGGCCGAGGATCGCG ACCACGCGCTGTCGGACATCTACCGCGTCATGCGCCCCGGCGAACCGCCGACGCGCGAGACGGCCGAAGCCCTGTTCGAA GGCCTGTTCTTCGACGGCGAGCGCTATGATCTCTCGGCCGTGGGCCGCGTGAAGCTCAACATGCGCCTTGGCCTCGACGC TGAGGACACCATCACCACGCTGCGCCGCGAGGACATCCTCGCAGTCGTCAAGGAACTGGTGAACCTCAAGGACGGCAAGG GCGAGATCGACGACATCGACAATCTCGGCAACCGCCGCGTGCGTTCGGTCGGCGAGCTGCTGGAAAACCAGTATCGTGTC GGCCTGCTGCGCATGGAGCGCGCGGTGAAGGAGCGCATGTCGAGCGTCGACGTCTCGACGGTGATGCCGAACGACCTGAT CAACGCGAAGCCGGCCGTAGCCGCCGTGCGCGAGTTCTTCGGCTCCTCCCAGCTCTCGCAGTTCATGGACCAGACCAACC CGCTCTCCGAGATCACGCACAAGCGTCGCGTCTCGGCGCTCGGGCCGGGCGGTCTCACCCGCGAACGCGCCGGCTTCGAG GTCCGCGACGTTCACCCGACCCATTATGGCCGTATCTGCCCGATCGAGACGCCGGAAGGCCCGAACATCGGCCTCATCAA CTCGCTGGCGAGCTTCTCGCGCGTCAACAAGTACGGCTTCATCGAGACGCCCTATCGCAAGGTGGTCGACAACAAGGTGA CTGACGAGGTCGTCTATCTGTCCGCCATGGAAGAAGCGAAACACACGATCGCGCAGGCCAATGCGGAGCTGACCGAGGAC GGCCAGTTCGTCGAGGAACTCGTTTCCTCGCGTGAAGCCGGTGAGTTCCTGATGGCGCCGCGCGATCATATCACGCTGAT GGACGTCAGCCCCAAGCAGCTTGTCTCGGTTGCCGCTTCGCTCATTCCGTTCCTGGAAAACGACGACGCCAACCGCGCGC TCATGGGCTCGAACATGCAGCGTCAGGCCGTGCCTCTGGTGCGGGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAAGAG ACGGTGGCACGCGATTCCGGCGCCGCCATCGCCGCCAAGCGCTCGGGTATCGTCGATCAGGTCGACGCGACCCGTATCGT GATCCGTGCCACGGAGGATGTCGAGCCGGGCCGTTCGGGCGTGGACATCTACACGCTGATGAAGTTCCAGCGCTCCAACC AGGACACCTGCATCAACCAGCGCCCGCTGGTGAAGGTGGGCGACCATGTTTCCGCCGGAGACGTGATCGCTGACGGTCCG TCCACGGAGCTGGGTGAACTGGCGCTGGGCCGCAACAGCCTCGTCGCCTTCATGCCCTGGAACGGCTACAACTACGAGGA CTCCATCCTCATCTCCGAGCGGATCGTGAAGGATGACGTCTTCACCTCGATCCACATCGAGGAGTTCGAGGTGATGGCCC GCGACACCAAGCTCGGGCCCGAGGACATCACGCGCGATATCCCGAACGTCGGCGAGGAAGCCCTGCGCAACCTCGACGAG GCGGGCATCGTCTACATCGGCGCCGAGGTCGAGCCGGGCGACATTCTCGTCGGCAAGATCACGCCGAAGGGTGAAAGCCC CATGACGCCGGAGGAAAAGCTCCTCCGCGCGATCTTCGGCGAGAAGGCCAGCGATGTGCGCGACACCTCGCTCCGCCTGC CCCCGGGCGTTGCCGGCACGATCGTCGAGGTGCGCGTGTTCAACCGCCACGGCATCGACAAGGACGAGCGCGCGATGGCG ATCGAGCGTGAAGAGATCGACCGCCTCGCCAAGGACCGCGAGGACGAGCGCGCCATTCTCAATCGCGCCACGTTCAACCG TCTGCGCGAGATGCTGATCGGGCAGGTCGCCACGGCGGCCCCGAAGGGCGTGAAGAAGGGCGTCGAGATCGACGAGGCTC TGCTTTCCGAGGTCGAGCGTCATGAATGGTGGAAGTTCGCTGTGGCGGACGACACGCGCCAGACGCAGCTCGAAGCCGTG AAGGCGCAGTATGACGAGGCAGTGAAGCTGATCGTCGAGAAGTTCGAGGACCGTGTCGAGAAGCTGCAGCGCGGCGACGA GCTGCCCCCGGGCGTGCTCAAGATGGTCAAGGTGTTCGTCGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCG GCCGTCACGGCAACAAGGGTGTCATCTCGCGCATCCTGCCGATCGAGGACATGCCGTTCCTTGAGGACGGCACGCCTGTC GACATCGTGCTGAACCCGCTCGGCGTGCCTTCGCGCATGAACGTCGGTCAGATCTTCGAGACGCATCTGGGCTGGGCTGC ACGCGGTCTTGGTCAGCAGATCAAGCAAGCCCTGCAGGACTGGCGCGAGGCCAATCCCGGCGTGACCGGCGGTGAAATGC CGGAAGCGGTGAAGGAGCGGCTGCTCACTGTCTATGGCGACAATTACGCCGCGGACATCGAGGCGCGCAGCTCCGAGCAG ATCGTGGAACTGGCATCCAACCTGGTGACCGGCGTGCCGATCGCGACGCCTGTGTTCGACGGTGCCCGCGAGGCGGACGT CTCGGCCATGCTGGAGCTGGCCGGGCTCGATCCTTCGGGACAGTCGACGCTGTTCGACGGCCGGACTGGCGATGCCTTCG ACCGGAAGGTGACTGTCGGCATCATCTACATGCTGAAGCTGCATCACCTCGTCGATGACAAGATCCACGCTCGTTCGATC GGACCTTACAGCCTCGTCACCCAGCAGCCGCTGGGCGGCAAGGCCCAGTTCGGTGGCCAGCGCTTCGGTGAGATGGAGGT CTGGGCGCTCCAGGCCTATGGCGCGGCCTACACGCTGCAGGAGATGCTGACGGTGAAGTCGGACGACGTGGTCGGCCGCA CCAAGGTCTACGAGGCGATCGTCAAGGGTGACGACACGTTCGAGGCCGGCATCCCCGAGAGCTTCAACGTGCTGGTCAAG GAAATGCGCTCGCTCGGCCTCAATGTGGAGCTGGCAGCGCTGGAAGACATGAGCGACGAGGACGGCGACGGCGAACTGCC CGAGGCCGCGGAATAA Protein sequence : MATKALPPSTAGESAKKRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSNPAIGYVSGLEKTLRSVFPIRDFAGTAELDF VHYELEDPKYDTEECRQRGITYAAPMRVTLRLIVFEVDADTETRSVLDIKEQDVYMGDMPLMTGNGTFIINGTERVIVSQ MHRSPGVLFDHDRGKTHSSGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNSEDILGEFYNKI TYVRGQNGWQIPYTAEAWRGQKPMFDIVDAKTGEVVFAAGQKISPRAALKAQKDGLESLVIPTEEIYGRYSAYDLINETT GAIYIEAGDEVSPENLAKLDEAGIDRIELLDIDHVNTGPWIRNTLKVDKAEDRDHALSDIYRVMRPGEPPTRETAEALFE GLFFDGERYDLSAVGRVKLNMRLGLDAEDTITTLRREDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRV GLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFE VRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIETPYRKVVDNKVTDEVVYLSAMEEAKHTIAQANAELTED GQFVEELVSSREAGEFLMAPRDHITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEE TVARDSGAAIAAKRSGIVDQVDATRIVIRATEDVEPGRSGVDIYTLMKFQRSNQDTCINQRPLVKVGDHVSAGDVIADGP STELGELALGRNSLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDE AGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGIDKDERAMA IEREEIDRLAKDREDERAILNRATFNRLREMLIGQVATAAPKGVKKGVEIDEALLSEVERHEWWKFAVADDTRQTQLEAV KAQYDEAVKLIVEKFEDRVEKLQRGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTPV DIVLNPLGVPSRMNVGQIFETHLGWAARGLGQQIKQALQDWREANPGVTGGEMPEAVKERLLTVYGDNYAADIEARSSEQ IVELASNLVTGVPIATPVFDGAREADVSAMLELAGLDPSGQSTLFDGRTGDAFDRKVTVGIIYMLKLHHLVDDKIHARSI GPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVK EMRSLGLNVELAALEDMSDEDGDGELPEAAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 59 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 59 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 58 |
| rpoB | YP_004834689.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
