Gene Information

Name : clpB (FBFL15_0253)
Accession : YP_004842628.1
Strain : Flavobacterium branchiophilum FL-15
Genome accession: NC_016001
Putative virulence/resistance : Virulence
Product : ATPase with chaperone activity ATP-binding subunit
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 292623 - 295226 bp
Length : 2604 bp
Strand : -
Note : -

DNA sequence :
ATGAACATTAATAAATTTACAACCAAATCGCAGGAAGCCATCCAACTTTCGCAACAAATTGTGCAAAGTGTGGGGCAACA
ACAAATAGAAAATGAGCATATTTTCAAAGCACTTTTAGAAGTGGATGAAAATGTAACGCCTTTTTTATTAAAAAAATTGA
ATGTGAATGTGCCGCTTTTCAAACAAATCTTGGAAAGTACCATTCAAAGTTTTCCAAAAGTTTCCGGTGGCGAAATCATG
CTATCCAGAACCGCTAATTCGACTCTGAACGAGGCCGAAATTTTGGCTGGAAAAATGAACGACGAATTTGTTTCGGTAGA
ACATTTGGTACTCGCTATTTTTGGGTCGAAAACTAAAGTAGCCCAAATTTTAAAAGACCAAGGCGTTACCGAAAAAAGTC
TAAAATCGACAATTGAGGAAATGAGAAAAGGCGAAAGAGTAACCTCTGCCTCTGCCGAAGAAACTTATAACGCCTTAAAC
AAATACGCCAAAAACCTCAACGATTTAGCCCGAAGCGGCAAATTAGACCCTGTTATTGGTCGTGACGAGGAAATTCGTCG
TGTGTTGCAAATTCTAACCCGTAGAACCAAAAACAACCCCATGTTGGTGGGTGAACCTGGTGTGGGTAAAACCGCCATTG
CCGAAGGTTTAGCACACCGAATTGTAGATGGTGATGTACCCGAAAACCTAAAAGACAAAATTATCTTCTCCCTTGATATG
GGCGCTTTGATTGCGGGTGCCAAATACAAAGGCGAATTTGAAGAACGTTTGAAATCGGTAGTGAAAGAAGTAACTGCTGC
CGAAGGCGACATTGTCCTTTTCATTGACGAAATCCACACTTTAGTGGGTGCTGGCGGTGGCGAAGGGGCGATGGATGCGG
CTAATATTTTGAAACCTGCTTTGGCACGTGGCGAGTTGCGTGCCATTGGAGCAACCACTTTGGACGAATACCAAAAATAT
TTTGAAAAAGACAAAGCCCTTGAAAGACGTTTCCAAAAAGTACTAGTCGAAGAACCCGATACCGAAAGTGCTATTTCTAT
CTTGCGTGGCATTAAAGAAAAATACGAAACGCACCACAAGGTACAAATCAAAGACGAGGCCATTATTGCAGCGGTTGAAT
TGTCGCAGCGTTATATTACCAATCGTTTTTTACCTGATAAAGCCATCGATTTAATGGACGAAGCGGCTTCAAAATTGCGA
ATGGAAATCAATTCAAAACCCGAAGAATTAGACGTTTTGGATCGAAAAATCATGCAATTGGAAATTGAAATTGAAGCTAT
CAAACGGGAGAAAGACGAAAGCAAGTTGAAAGTTTTGGGCATGGAATTGGCGAACTTGAAAGAAGACCGCAACGAGATTT
ATGCCAAATGGAAATCGGAAAAAGATGTGGTGGACAACATTCAAGCCGTGAAAACCGAAATTGAAGATTTCAAATACGAA
GCCGAGCGTGCAGAACGGGATGGAGATTACGGAAAAGTAGCTGAAATTCGGTATGGAAAAATCAAAGAAGCTCAAGAACG
TTTGGATGTTTTGGTGAAACAAATACAAGAAAATCAAGCAGGAACATCTTTGATTAAAGAAGTTGTTACCCGAGAAGATA
TTGCCGAAGTTGTGGCTAAATGGACTGGAATTCCAGTAACCAAAATGCTCCAAGGAGAAAGAGAAAAACTCTTGAAATTG
GAAGACGAATTACACAAACGTGTGGTGGGACAAGAAGAAGCCATTGAAGCCGTAAGTGATGCCGTTCGTAGAAGTCGTGC
GGGTTTGCAAGACATGAAAAAACCTGTGGGTACCTTCCTTTTCTTAGGAACAACTGGAGTGGGTAAAACCGAATTGGCGA
AAGCCCTAGCTGAATATTTGTTTGACGATGAAAATGCCATGACCCGAATTGACATGAGCGAATACCAAGAACGTCATTCG
GTGAGTCGTTTGGTGGGTGCTCCTCCAGGCTATGTGGGCTATGACGAAGGTGGGCAATTGACCGAGGCGGTGCGAAGAAA
ACCCTACTCTGTGATTTTGTTGGACGAAATTGAAAAAGCCCATCCAGATACCTTTAATATCTTGTTGCAGGTGCTAGACG
AAGGCCGTTTGACGGATAACAAAGGCCGCTTGGCCGACTTCAAAAACACGATTATCATCATGACCTCGAATATGGGTAGC
CAAATTATTCAAGATACTTTTGAAAACTTGAAAGGCAGTGTTGAAGCGGCTACAGAAGCTGCCAAAGTGGAGGTTTTAGG
TTTATTGAAACAAACGGTGCGACCTGAATTCATCAATCGAATTGACGAAATTGTGATGTTTACCCCATTAACAAATGCTA
ATATTGCACAAATCGTAGGTTTACAATTGAAATCGGTTACTAAAATGCTAGCACAACAAGGCATCACTATGGACGCTACA
CCCGAAGCCATTCAGTATTTGTCTCAAAAAGGATATGATCCACAATTTGGAGCAAGACCTGTAAAAAGAGTGATTCAAAG
GGAAGTACTGAACCAATTATCTAAAGAAATATTGGCAGGACAAATCAAAACGGACAGTATCATTTTGTTGGATGCGTTTG
ACAGCCAATTGGTTTTTAGAAATCAAGGGGCAGTTTTGAGTTAA

Protein sequence :
MNINKFTTKSQEAIQLSQQIVQSVGQQQIENEHIFKALLEVDENVTPFLLKKLNVNVPLFKQILESTIQSFPKVSGGEIM
LSRTANSTLNEAEILAGKMNDEFVSVEHLVLAIFGSKTKVAQILKDQGVTEKSLKSTIEEMRKGERVTSASAEETYNALN
KYAKNLNDLARSGKLDPVIGRDEEIRRVLQILTRRTKNNPMLVGEPGVGKTAIAEGLAHRIVDGDVPENLKDKIIFSLDM
GALIAGAKYKGEFEERLKSVVKEVTAAEGDIVLFIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLDEYQKY
FEKDKALERRFQKVLVEEPDTESAISILRGIKEKYETHHKVQIKDEAIIAAVELSQRYITNRFLPDKAIDLMDEAASKLR
MEINSKPEELDVLDRKIMQLEIEIEAIKREKDESKLKVLGMELANLKEDRNEIYAKWKSEKDVVDNIQAVKTEIEDFKYE
AERAERDGDYGKVAEIRYGKIKEAQERLDVLVKQIQENQAGTSLIKEVVTREDIAEVVAKWTGIPVTKMLQGEREKLLKL
EDELHKRVVGQEEAIEAVSDAVRRSRAGLQDMKKPVGTFLFLGTTGVGKTELAKALAEYLFDDENAMTRIDMSEYQERHS
VSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVILLDEIEKAHPDTFNILLQVLDEGRLTDNKGRLADFKNTIIIMTSNMGS
QIIQDTFENLKGSVEAATEAAKVEVLGLLKQTVRPEFINRIDEIVMFTPLTNANIAQIVGLQLKSVTKMLAQQGITMDAT
PEAIQYLSQKGYDPQFGARPVKRVIQREVLNQLSKEILAGQIKTDSIILLDAFDSQLVFRNQGAVLS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-92 41
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-92 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB YP_004842628.1 ATPase with chaperone activity ATP-binding subunit VFG2076 Protein 1e-109 44
clpB YP_004842628.1 ATPase with chaperone activity ATP-binding subunit VFG2084 Protein 2e-95 43