Gene Information

Name : XACM_3391 (XACM_3391)
Accession : YP_004852936.1
Strain : Xanthomonas axonopodis F1
Genome accession: NC_016010
Putative virulence/resistance : Virulence
Product : ABC transporter permease/ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG2274
EC number : -
Position : 3940592 - 3942757 bp
Length : 2166 bp
Strand : -
Note : COG2274; V Defense mechanisms

DNA sequence :
ATGTCAGGGGGAAGTGCGTCGCTCTCGTTGGTCGAGGGCGGCTCGTCGGTGCAAGACCGACCGGATTTGGGGCTGCAGGG
ACTTGTCCTTCTTGCGCAATTTCATGGCGTTGCCGCCGATGCGACGCAGCTTGCGCACGGCTTTGGCCGTGGGGGCGAGC
CGTTCGACGAAACCACGCTGCTGCTGGCAGCCAAGCAGTTGGGACTGAAAGCCAAAGTCGTGGCCCAGCCGGCCGCGCGG
ATCGGCATGGCGGCGTTGCCGGCATTGGCGCTGGTGCCCGAAGGAGACGCTTTCATTGTCGCCAAGGTCGGTGCGGACCA
GATCCTGATCCACGATCTGGTCGAAAAGCGGCCGCGCTCCATCTCGCCCGCCGAGTTCGAAGCACGTTACCAGGGGCGGT
TGCTGCAGGTGGCCTCGCGGGCTTCGGTGCTTGGCGACCTGGCCAAGTTCGACTTCAGCTGGTTCATTCCCGCAGTGGTG
AAGTACCGCAAGTTGATGCTCGAGGTCTTTATCGTCTCGTTCTTCATCCAGCTGTTCGCGCTGATCACACCGCTGTTCTA
TCAAGTGGTGATGGACAAGGTGCTGGTGCACAACGGCCTGACCACGCTGGACGTGATCGCGATCGGGCTGGTCTCGATGG
CGGTGTTCGACGTGCTGCTGTCCGGACTGCGTACCTACGTCTTCGCCCACACCACCAGCAAGATCGATGTGGAACTGGGT
GCGCGCTTGTTCCGGCATGTGTTGTCGCTGCCGCTGGCGTATTTCGAATCGCGGCGGGTCGGCGACACCATCGCGCGCGT
CCGCGAGCTGGAGAACATCCGCAACTTCCTGACCGGACAGGCGCTGACCTCGGTGCTGGACCTATTCTTTACGGTGGTCT
TTCTGTCGGTGATGTTCTGGTACAGCGGTTGGCTGACCTTGATCGTGGTGCTGTCGCTGCCGTTGTACGCGACCATCTCG
GGCCTGGTCACCCCGGTGCTGCGCAAACGCCTGAACGACAAGTTCGCGCGCGGCGCAGACAACCAATCCTTCCTGGTGGA
GACAGTCAGCGGTATCGGCACGGTCAAGGCGATGGCGGTGGATCCGCGCGTGACCCGTACCTGGGACAACCAGCTGGCCG
GCTATGTCAGCGCCGGTTTCAACGTCACCCGCATTGCCACGCTGGGCCAGCAAGGCGTGCAACTGGTGCAGAAGCTCACT
GCCGTGGCGGTGCTGTTCTGGGGCGCCAAGCTGGTGATGGAAGGCAAGCTGTCGATTGGTCAATTGATCGCCTTCAACAT
GCTCTCGGGCCAGGTCACCGCGCCGATCATTCGGTTGGCTCAGTTGTGGCAGGACTTCCAGCAGGTCGGCATTTCGGTCG
AGCGGCTGGGCGACATCCTCAATACCCGCACCGAGGTGCCGGGCAGCCGCCTGGCATTGCCGCCGATTCGCGGGCAGGTG
ACGTTCGAGCGGGTCACGTTCCGCTACCGGCCGGATGCGCCCGAGGTGCTCAACGGGATCGAGCTGGATGTCCGCCCAGG
CGAAATCATCGGCATCGTCGGCCGTTCCGGCTCCGGCAAGAGCACGCTGACCAAGCTGGTGCAGCGGCTCTACACGCCCG
AGCGCGGGCGAGTGCTGATCGATGGCCAGGACCTGGCGCTGGCCGATCCGGCCTGGTTGCGTCGTCAGCTGGGCGTGGTG
CTGCAGGAAAACTTCCTGTTCAACCGCAGCGTGCGCGAGAACATCGCTTTGACCGATCCCGGCATGCCGCTGGAGCGGGT
GATCCATGCGGCCAAGCTGGCAGGTGCCCACGACTTCATTCTGGAACTGCCGGAAGGCTACGACACCAAGGTTGGCGAGC
ACGGCACCGGCCTGTCCGGTGGGCAGCGGCAGCGCATTGCGATCGCGCGCGCACTGATCGGCGATCCGCGCATTCTGATT
CTCGACGAAGCCACCAGCGCCCTGGATTACGAATCGGAACACGCGGTGATGAGCAATATGCGCGCGATCTGCAAGGGACG
CACCGTGCTGATCATCGCGCACCGCCTTTCTACCGTGCGGCAGGCCAATCGCATTGTCGTGGTGGAGAAGGGACGCATCG
TCGAGAGCGGCTCGCATGCCGAGCTGGTCGACCGCCCGGAAGGCCAATACGCACATCTGTACAGACTGCAACAGGGGACA
CCATGA

Protein sequence :
MSGGSASLSLVEGGSSVQDRPDLGLQGLVLLAQFHGVAADATQLAHGFGRGGEPFDETTLLLAAKQLGLKAKVVAQPAAR
IGMAALPALALVPEGDAFIVAKVGADQILIHDLVEKRPRSISPAEFEARYQGRLLQVASRASVLGDLAKFDFSWFIPAVV
KYRKLMLEVFIVSFFIQLFALITPLFYQVVMDKVLVHNGLTTLDVIAIGLVSMAVFDVLLSGLRTYVFAHTTSKIDVELG
ARLFRHVLSLPLAYFESRRVGDTIARVRELENIRNFLTGQALTSVLDLFFTVVFLSVMFWYSGWLTLIVVLSLPLYATIS
GLVTPVLRKRLNDKFARGADNQSFLVETVSGIGTVKAMAVDPRVTRTWDNQLAGYVSAGFNVTRIATLGQQGVQLVQKLT
AVAVLFWGAKLVMEGKLSIGQLIAFNMLSGQVTAPIIRLAQLWQDFQQVGISVERLGDILNTRTEVPGSRLALPPIRGQV
TFERVTFRYRPDAPEVLNGIELDVRPGEIIGIVGRSGSGKSTLTKLVQRLYTPERGRVLIDGQDLALADPAWLRRQLGVV
LQENFLFNRSVRENIALTDPGMPLERVIHAAKLAGAHDFILELPEGYDTKVGEHGTGLSGGQRQRIAIARALIGDPRILI
LDEATSALDYESEHAVMSNMRAICKGRTVLIIAHRLSTVRQANRIVVVEKGRIVESGSHAELVDRPEGQYAHLYRLQQGT
P

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 0.0 63
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 0.0 63
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 0.0 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
XACM_3391 YP_004852936.1 ABC transporter permease/ATP-binding protein VFG1501 Protein 0.0 63
XACM_3391 YP_004852936.1 ABC transporter permease/ATP-binding protein VFG0907 Protein 0.0 63
XACM_3391 YP_004852936.1 ABC transporter permease/ATP-binding protein VFG1557 Protein 0.0 63
XACM_3391 YP_004852936.1 ABC transporter permease/ATP-binding protein VFG0841 Protein 0.0 60
XACM_3391 YP_004852936.1 ABC transporter permease/ATP-binding protein VFG1269 Protein 0.0 59