|
Name : Cabther_A0241 (Cabther_A0241) Accession : YP_004861524.1 Strain : Genome accession: NC_016024 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 287788 - 292227 bp Length : 4440 bp Strand : + Note : - DNA sequence : ATGTCGCACAACGGTAAGGAGACGCGGGCGCGTCACGACTTCTCGAAGATCAAGACGGCAATTCGCATCCCGAACCTCAT CGAGGTTCAACGCGAGTCGTACTATCGCTTCCTTCAAATGGACAAGCTGCCCGAAGAGCGTGAAAATATCGGCCTTCAGG CGGTTTTCAAATCTGTATTTCCCATCAAGGATTTCCGTGACACAGCCCAGTTGAGTTTTGTTGAATACTCGATTGGCGAG TGGAAATGCAAGTGTGGCAAAAACGAGGGCTTGCAGTTTCTCCGTTCCAACTGTCACAACTGCGGGGCCGTCATTCAGGT TGATCCACTTTCGGGCGAAGACGTGATTTGTCGTGCCTGTGGCGCGGCCAACAAAAATATCGTCACCACCTGTGACGTAT GTGGTGAGCCGGTCGGTCTCAAGCACAAATACGAAGTCCGCGAATGCCAGGAGCGCGGCATGACTTATGCCGTTCCGCTC AAGGTCAAAATCCGCCTGACGCTCTGGGACAAAGACGAAGAAACCGGACAGCGCAGCCTGCGCAACTTTCTGGACGAGGA TGTGTATTTTGGCGACATCCCGCTGATGACCGAAAACGGCACATTCATCATCAACGGGACGGAGCGCGTCATCGTTTCCC AGCTTCACCGCAGTCCGGGAGTATTCTTTGAAAAGTCTCCGACCTATCTGGCGAAAGTCATTCCCTACCGTGGTTCGTGG ATCGAGTTTGAGTACGACCAGAAAAATCTGCTCTACGTACGGATTGACCGGAAGCGGAAGTTTCTGGCGACGATCTTCCT GCGGGCGTTGGCGCTTATCCAGAAACTCGACATGGAAGCCATCGAGCGGGGCGACTACACCGATGCCCAACTGGAAGAGC GCATCAAGGCGACGACATGTACGGACGTTGAAATCCTGCGGCAGTTTTACCAGGTGGCCACGATGGAGGTCCACCAGGAG AGTCTCTGGTTTCCCATCAGTCCGTTGCTGCTTGATATGCGTCTCACCGGCGGGGTCAAGCACCCCGAAACCGGTGAGAC CCTGCTGCGTCCGGGACAGAAAGTAATGCCAAAGCACCTGAAAACCTTTCGTGAGGCTGGTGTGACCAAAGTCGCGGTCA GTGCACCGGACCTCACAGGGGCGACGGCGCTGGCTGATATTGTGGATGTGGCCACTGGTGAGGTTCTGGTTGAGGCCGGG ACGGAGTTGACGGCACGGGAGTATGAAAAGCTCTTTGCTGCCGGGGTCGAAAGCTTCGAGGTGTATTTCCCCGAACGGGA TGACATCGGAACGATTCTCCAGCAAACACTCAAGAAGGACACCATCCGCCGGCCTGTGGATGCGCTGCTGGAAATCTACC GCAAGATGCGGCCCGGCGATCCGCCCACGATTATGACTTCCTGGGGGCTATTTTACGGGATGTTTTTCGATGCCCGGAAG TTCGATTTCTCGCGCGTCGGGCGACTCAAGTTCAACATCAAGATGGGGCATCCCGAACGGGCGAACCTCGACCAGCAAAC GCTTTCGCCGCGCGACTTTGTGGATGTCATCACCTATCTGCTCAAGCTGCGCAAAGGGCGCGCCATCGGGCCGGATGGAC AGGAAATGACCTACGACGCCGATGACATTGACCACCTGGGCAATCGGCGGGTGCGCGCCGTTGGTGAGTTGCTCGAAAAC CAGTTTCGGCTGGGGCTGGTGCGCATGGAACGGGCCATCAAGGACAAGATGTCCATCCACCAGGAGATGCAGCAGGCAAT GCCGCGCGACCTCGTCAACGCCAAGCCGGTCATGGCGGCCGTACGGGAGTTCTTTGGTTCGTCACAGCTTTCGCAGTTTA TGGACCAGACGAATCCGTTGTCGGAGATCACCCACAAGCGGCGGCTTTCGGCGCTGGGTCCGGGCGGACTCTCCCGTGAG CGGGCTGGCTTTGAGGTACGCGACGTGCATCCGACCCACTACGGCCGCATCTGCCCGATTGAAACGCCGGAAGGGCCGAA CATCGGGTTGATTTCGTCTCTGTCGTGCTTTGCGCGGATCAATGAGTTTGGCTTTATCGAGTCGCCCTACCGCAAGGTGG AAAACGGGCGGGTCATTGAGTACGTCCGCATCACCAACGGTGGCGATACCAATCTGCGACCAGGGTCCCATATCCCTCTT TCTGAAGCCGAGGCGGCCAATGCGGCGCTCAAGCCCGACCAGAAGCCGGCAGAATATGAACCTTACCCGTTTTATCTCTC GGCCTGGGAGGAAGACAAATACACCATCGGGCAGGCCAACATCCGGCTCAACGAACGGCTCGAAATTATTGACGAGCGGG TGTCAGCCCGCAAAGCCGGGGAGTTTCGTGAGGTTCCACGGGAAGAAATCCAGTTTATAGACGTATCGCCAAAGCAGCTT GTGTCGGTAGCCGCAGCCCTCGTGCCATTTCTTGAGCACGATGACGCCAACCGCGCGCTGATGGGTGCCAACATGCAACG GCAGGCAGTGCCTTTGTTGCGCGCAGAAGCGCCCTTGATCGGGACAGGCATGGAGCGGGTTGCGGCGCAGGATTCCGGCG CGGTTGTCATTGCACGCCGCGATGGCATTGTGGACAGCGTGGATTCCGAACGCATCATCATCCGGGTGGATACCACGCAG CCCGGCACGCTCTCGCGTGAGGTGACGGCGGACATTTACCAGTTGGTCAAGTTCCGGCGCTCCAACCAGAGCACCTGCAT CAACCAGAAACCCATTGTGCGCGTGGGGCAGCGCGTCAAGAAAGGGGACGTGCTGGCGGATGGCCCCTGCACCGACCAGG GTGAGCTGGCGTTGGGCCGCAACGTGCTCGTGGCCTTTATGCCGTGGCGCGGCTACAACTTCGAGGACGCCATCCTCATT TCGCAGAAACTCGTGCAGGAGGATGCCTACACGTCCGTCCACATCGAGGAACTTGAAATCGAAGCCCGGGACACCAAGCT TGGCCCGGAAGAAATCACCCGCGACATTCCGAACGTTTCAGAATCCAGCCTCCGTGACCTGGATGAATCCGGCGTCATCC GCATCGGGGCCCGCGTCAAGCCGGGTTCGATTCTTGTCGGGAAGGTGACGCCCAAAGGCGAAACCCAACTGACACCGGAG GAAAAGCTGCTGCGCGCCATTTTTGGCGAAAAAGCTGGGGATGTCCGCGATGCCTCCCTGACCTGTCCGCCTGGTATCGA GGGCACTGTCGTGGACGTCAAAATCTTCACCCGCAAGGGACAGGAAAAGTGCAAGCGCTCCCTGGCCATTGAGGCTGAGG AAGAAGCGCGATTGCTCAAAAATCTGGAGGATGAGCGTCGCATTCTCGAAGACGAGCGCAACAAGCGGATTTACGAGCTT CTGGAAGGGCAGCGGGTGGCCAAGGATGTGCTCGTCAACAAGCGGGCCGTACTCGGCAAGGGCGAAGTCCTGACCCGTGA CTTTCTCAGGACGCTCGATCTGGCCACGCTCAAGAAAATCGAGCTTCAGAATCCCAAGATTGATGTGGCCGCTGAAATCA AAGAACTTGAAGAGTTCACCAAGCGGCAGTTTGCCATTCTCCAGAGGCTGCACGAAGAGAAGGTCGAAAAACTCAAACGT GGCGACGAACTCCCGCCGGGCGTCATCAAGATGGTCAAGGTGTTCATCGCCATGAAGCGCAAGCTGTCCGTGGGTGACAA AATGGCCGGACGGCATGGCAACAAGGGGGTCATCGCCCAGATTCTGCCGGAAGAGGACATGCCTTACCTGCCTGACGGGC GGCCCGTCGAAATCGTGCTCAACCCGTTGGGCGTGCCGTCGCGCATGAACGTCGGCCAGATTCTGGAAACGCACCTGGGC TGGGCGGCGCACGTACTGGGCGTGCAGTTTGCTACACCAGTGTTTGACGGAGCTTCAGAAGCCGAAGTCAAGCAGAAGCT GGCCGAAGCGGCAGCGCTGCGGGAATCCCAGGGTGAACTGCCGATGATCAACCAGTCCGGCAAGACTGTGCTGTATGACG GCATGACGGGTGAACCCTTCGAGCAGTTGGTCACGGTCGGCTACATCTACATGCTGAAACTCTCACATCTGGTGGACGAC AAGATTCATGCCCGCTCCATCGGTCCCTACTCCCTTATCACGCAGCAGCCGCTGGGCGGCAAGGCGCAGTTTGGCGGTCA ACGCTTCGGAGAAATGGAGGTGTGGGCGCTTGAAGCCTACGGAGCAGCACACATTCTCCAGGAGCTGCTGACGGCGAAAT CGGATGATGTCGCCGGCCGCTCGAAGAGCTACGAGGCGATTGTGAAGGGAGAAACCGACTTTGATCCCGGCGTGCCAGAG TCCTTCAACGTGCTGGTGCGGGAGCTACAGTCGTTGTGTCTCGATGTCGAACTCATCAAGCGCTCGGAGGACTCGAATGG TGCGTCCGCTGAGTCGCCCGCAACCCTGTCGCGTCGCTGA Protein sequence : MSHNGKETRARHDFSKIKTAIRIPNLIEVQRESYYRFLQMDKLPEERENIGLQAVFKSVFPIKDFRDTAQLSFVEYSIGE WKCKCGKNEGLQFLRSNCHNCGAVIQVDPLSGEDVICRACGAANKNIVTTCDVCGEPVGLKHKYEVRECQERGMTYAVPL KVKIRLTLWDKDEETGQRSLRNFLDEDVYFGDIPLMTENGTFIINGTERVIVSQLHRSPGVFFEKSPTYLAKVIPYRGSW IEFEYDQKNLLYVRIDRKRKFLATIFLRALALIQKLDMEAIERGDYTDAQLEERIKATTCTDVEILRQFYQVATMEVHQE SLWFPISPLLLDMRLTGGVKHPETGETLLRPGQKVMPKHLKTFREAGVTKVAVSAPDLTGATALADIVDVATGEVLVEAG TELTAREYEKLFAAGVESFEVYFPERDDIGTILQQTLKKDTIRRPVDALLEIYRKMRPGDPPTIMTSWGLFYGMFFDARK FDFSRVGRLKFNIKMGHPERANLDQQTLSPRDFVDVITYLLKLRKGRAIGPDGQEMTYDADDIDHLGNRRVRAVGELLEN QFRLGLVRMERAIKDKMSIHQEMQQAMPRDLVNAKPVMAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRE RAGFEVRDVHPTHYGRICPIETPEGPNIGLISSLSCFARINEFGFIESPYRKVENGRVIEYVRITNGGDTNLRPGSHIPL SEAEAANAALKPDQKPAEYEPYPFYLSAWEEDKYTIGQANIRLNERLEIIDERVSARKAGEFREVPREEIQFIDVSPKQL VSVAAALVPFLEHDDANRALMGANMQRQAVPLLRAEAPLIGTGMERVAAQDSGAVVIARRDGIVDSVDSERIIIRVDTTQ PGTLSREVTADIYQLVKFRRSNQSTCINQKPIVRVGQRVKKGDVLADGPCTDQGELALGRNVLVAFMPWRGYNFEDAILI SQKLVQEDAYTSVHIEELEIEARDTKLGPEEITRDIPNVSESSLRDLDESGVIRIGARVKPGSILVGKVTPKGETQLTPE EKLLRAIFGEKAGDVRDASLTCPPGIEGTVVDVKIFTRKGQEKCKRSLAIEAEEEARLLKNLEDERRILEDERNKRIYEL LEGQRVAKDVLVNKRAVLGKGEVLTRDFLRTLDLATLKKIELQNPKIDVAAEIKELEEFTKRQFAILQRLHEEKVEKLKR GDELPPGVIKMVKVFIAMKRKLSVGDKMAGRHGNKGVIAQILPEEDMPYLPDGRPVEIVLNPLGVPSRMNVGQILETHLG WAAHVLGVQFATPVFDGASEAEVKQKLAEAAALRESQGELPMINQSGKTVLYDGMTGEPFEQLVTVGYIYMLKLSHLVDD KIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHILQELLTAKSDDVAGRSKSYEAIVKGETDFDPGVPE SFNVLVRELQSLCLDVELIKRSEDSNGASAESPATLSRR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 50 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 50 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 49 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 49 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 49 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 48 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| Cabther_A0241 | YP_004861524.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 46 |
