Gene Information

Name : Cabther_A0536 (Cabther_A0536)
Accession : YP_004861810.1
Strain :
Genome accession: NC_016024
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 632725 - 635364 bp
Length : 2640 bp
Strand : +
Note : -

DNA sequence :
ATGCGTCACGACCAGTTCACCCTCCGCGCCCAGGAAGCCATTGCGGCTGCCGTCAATCTCACCCAGGAACGACAGCACCC
ACAGGTCGAACCGGAACACCTGCTCGTGGCCCTCCTTGAGCAGTCCGACGGCATCACCAAGCCGATTCTTGAGAAGATTG
GGGCTTCGGTGCCGCGCGTGCTCAGGGATGCCGAGGAAGCCTTGGGCAAAATGGCGAAAGTGACGGGTGGGGAGCGGTAT
CTCTCCGGGCGACTCTCCACGCTGTTTGTCAATGCCCGCAAGGAAGCTGACAAGTTGCAGGATGCCTATGTCAGTACGGA
GCACCTGCTGCTCGCCATGGCCGAAGACAAGGAAAGCCAGGCCGGGCGCATTCTCCGGCAGCACGGCGTCACCCGTGATC
ACATTCTGAAAGTGGTTACGGAGTTACGCGGCAATGAGCGCATCGTGGATCAGGACCCGGAATCAAAGTACCAGTCGCTG
CAAAAGTACGGGCGCGATCTGACGGAACTGGCGCGCGCCGGCAAGCTCGACCCGGTCATCGGGCGGGACGATGAAATCCG
CCGGGTCATCCAGGTGCTTTCCCGGCGTACCAAGAACAACCCGGTGCTCATCGGCGAGCCGGGGGTTGGTAAAACGGCCA
TCGTCGAAGGGCTGGCCATGCGGATTGTCTCCGGGGATGTACCGGAGTCGCTCAAGAACAAGCGGCTGATGACGCTTGAC
CTGGGGGCGATGCTGGCCGGGGCCAAGTACCGTGGGGAGTTTGAGGACCGCCTCAAGGCTGTACTCAAGGAAGTGGTACG
CTCCAACGGTGAAATCATCCTGTTCATTGACGAACTCCACACGCTGGTGGGCGCCGGGGCTGCCGGTGACGGTGCGCTCG
ATGCCTCGAACATGCTCAAACCGGCGCTGGCGCGTGGCGAGTTGCACTGCGTAGGGGCGACGACGCTCAACGAGTACAAG
AAGCACATTGAAAAGGATGCAGCGCTGGAGCGGCGCTTCCAGCCGGTGTATGTGGCCGAGCCAAGCGTGGAGGACACGAT
TGCCATTCTCCGGGGCCTGAAGGAGCGCTATGAGGTTCACCATGGCGTCCGCATCAAGGATGCGGCCATCGTGGCGGCGG
CGACGCTCTCGAACCGGTACATTGCCGACCGGTTTCTGCCGGACAAGGCCATTGACCTGATTGACGAAGCCGCGTCGCGG
CTGCGGATCGAGATTGACAGCCTGCCGACAGAGATTGACGAAATCGAGCGCGACATCATGCAGCGCGAAATTGAGCGCCA
GGCATTGCAGCGCGAAGACGATCCGGCTTCCCGCGAGCGGCGGGCCAAAATCGAACAGGAAATCGCCGAGTTGCGCGAGC
GGAGTGCGGCGCTCAAGGCGCGCTGGACAAACGAAAAGGCCATCATCGAGGCCATTCGCGCCGACAAGGAGAAACTGGAG
GAACTCAAGCTCGAAGCCGAACGCTACGAGCGGCTGGGGGACTACGCCAAGGTGGCCGAAATCCGCTACGGACAGATGAA
TGAAGTCCGGCAGCGTATTGAAGCCAACCGGGCCAAGCTCGTCGAACTGCAATCGTCCGGGGCCATGCTCAAGGAAGAGG
TGGATGAAGCCGACATTGCCCTGGTGATTGCGAAGTGGACAGGCATCCCGGTGGCCAAGATGCTCGAAAGCGAGGTCCAG
AAGCTCATCCACATGGAGGAGCGGATGGGGCAGCGGGTGATTGGCCAGACCCAGGCCCTGCAGGCGGTGGCCAATGCCGT
CCGCCGGGCGCGGGCCGGGTTGCAGGACCCGAATCGCCCGATTGGTTCATTCATCTTCCTTGGCCCAACCGGGGTCGGTA
AAACCGAAACGGCCCGGGCGCTGGCGGAGTTTCTCTTTGACGATGAGCAGGCCATGGTGCGCCTCGATATGTCGGAGTAC
ATGGAGAAGCACACCGTGGCCCGGCTCATCGGCGCGCCGCCGGGCTACGTGGGCTATGACGAAGGTGGGCAGTTGACCGA
GGCCATCCGGCGGCGTCCATACGCGGTCATCCTGCTGGATGAAATCGAAAAGGCGCACCCGGATGTGTTCAACGTCCTGC
TTCAGGTGCTCGATGATGGCCGCCTGACGGACGGCAAAGGCCGGACGGTGGATTTCAAAAACACGGTCATCATCATGACT
TCAAACATCGGGAGTGGCGAAATTCTCGACTGGGGCGGCGACCCGGAACAGGATGCCGAGGTGCGGCAGCAGGTGATGGG
TCTGCTGCGCAAGGTGTTCAAACCGGAGTTTCTCAACCGGGTGGATGAGATTGTCATCTTCCATCCGCTGGGTCGCCGGC
ACTTGCACCGCATCATCGAGGTTCAGCTCGGCCGGTTGCAGGCGATGCTCGCCGAACGGCAGATCACACTGGAACTCACC
GATGCGGCGAAGGAATTGCTGGCCAGCGAAGGTTTTGACCCAACCTATGGCGCGCGTCCGCTCAAGCGCGCGCTTCAGAA
TCTGATCCAAAACCCGCTGGCCCTGAAGTTACTCGACGGGACTATCCGCGATGGACAGACCGTCCGGGTAGATGTCAACG
AAATGGGCGATGCGTTCACCTTCACCCCGGTCGCCAGCGCGGCAGCGGCCGAGACCACGGCCGGGGCAGTAAACGCCTAG

Protein sequence :
MRHDQFTLRAQEAIAAAVNLTQERQHPQVEPEHLLVALLEQSDGITKPILEKIGASVPRVLRDAEEALGKMAKVTGGERY
LSGRLSTLFVNARKEADKLQDAYVSTEHLLLAMAEDKESQAGRILRQHGVTRDHILKVVTELRGNERIVDQDPESKYQSL
QKYGRDLTELARAGKLDPVIGRDDEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAMRIVSGDVPESLKNKRLMTLD
LGAMLAGAKYRGEFEDRLKAVLKEVVRSNGEIILFIDELHTLVGAGAAGDGALDASNMLKPALARGELHCVGATTLNEYK
KHIEKDAALERRFQPVYVAEPSVEDTIAILRGLKERYEVHHGVRIKDAAIVAAATLSNRYIADRFLPDKAIDLIDEAASR
LRIEIDSLPTEIDEIERDIMQREIERQALQREDDPASRERRAKIEQEIAELRERSAALKARWTNEKAIIEAIRADKEKLE
ELKLEAERYERLGDYAKVAEIRYGQMNEVRQRIEANRAKLVELQSSGAMLKEEVDEADIALVIAKWTGIPVAKMLESEVQ
KLIHMEERMGQRVIGQTQALQAVANAVRRARAGLQDPNRPIGSFIFLGPTGVGKTETARALAEFLFDDEQAMVRLDMSEY
MEKHTVARLIGAPPGYVGYDEGGQLTEAIRRRPYAVILLDEIEKAHPDVFNVLLQVLDDGRLTDGKGRTVDFKNTVIIMT
SNIGSGEILDWGGDPEQDAEVRQQVMGLLRKVFKPEFLNRVDEIVIFHPLGRRHLHRIIEVQLGRLQAMLAERQITLELT
DAAKELLASEGFDPTYGARPLKRALQNLIQNPLALKLLDGTIRDGQTVRVDVNEMGDAFTFTPVASAAAAETTAGAVNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 2e-107 44
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 1e-107 44
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 4e-106 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cabther_A0536 YP_004861810.1 ATP-dependent chaperone ClpB VFG2076 Protein 3e-125 45