Gene Information

Name : TASI_1560 (TASI_1560)
Accession : YP_004875321.1
Strain : Taylorella asinigenitalis MCE3
Genome accession: NC_016043
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : K : Transcription
COG ID : COG0085
EC number : -
Position : 1620182 - 1624294 bp
Length : 4113 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTTACTCGTTTACTGAAAAGAAACGTATCCGCAAAAGTTTTGCTAAGCGCCAAGTCGTTCAGGACGTACCATACCT
TTTAGAAACACAAATTCAATCTTATCGTAGTTTTTTGCAGAAAGATTTAACGCCATCAAAAAGGGCGGAAATTGGCCTGC
AAGCGGCATTTAAGTCGATTTTTCCAATTGAAAGTAATAATGGATCGGCTAGGTTAGAATTTGTAAGTTATGTTCTTAAA
GAGCCGCCGTTTGACGTTAAAGAATGCCAATTACGCGGACTTACATATTACTCTGGACTTTATGCAAAAGTTCGTCTTGA
AATATTAGATAGAGAAGCTAGCAAGCCTACTGTTAAAGAGGTAAAAGAAGAAGAAGTTTATATGGGCGATTTGCCTTTGA
TGACAGATAACGGTTCATTTATCATTAATGGTACTGAGCGCGTTATCGTATCTCAATTGCATAGATCGCCTGGTGTGTTT
TTCGAGCATGATAAAGGTAAAAACCACAGCTCTAACAAATTGCTATTTTCTGCTCGTGTTATTCCTTATCGTGGCTCATG
GCTTGATTTTGAGTTTGACCATAAAGATTATCTATATTTTCGTATAGACCGTCGTCGCAAGATGCCTGTTACTATATTGC
TTAAAGCGATTGGCATGACAAGCGATGATATTTTGAGCACATTCTTTGAGTTCTCAAAATATGAACTTAAAGATGATGGT
GCGGTTCTAAATTTCTTGCCTGAACGCCTAAAAGGTGAAGTAGCACGCTTTGATATTGTCGATAAAAAAGGTAATGTTAT
CGTTCCTAAAGACAAACGTATCAATTCAAAACATTTGCGTGATATTGCAGCTGCTAAATTAACTAAATTACCTGTACCAG
ATGACTATTTGGTAGGACAAATCATTGCCAAAACAATTATTGATGAAGAAACAGGTGAAATTCTTGTTCAGTCTAATACA
GAAATAACTGAATCAGTTCTTGCTCAGTTACGCAAAGCTTCAATTAAAGAGTTCGAAACTCTATTTACCAATGAGCTAGA
TCATGGAGCTTATATTTCTTCTACATTGGCTATTGATGAGACACTAGATCAAACTGCGGCTCGTAAAGCTATTTATAAAA
TGATGCGTCCAGGCGAATTGCCTGCAGACGATGCTGTAGAGTCTTTATTTAACCGTATGTTCTATAACGCAGATACTTAC
GATTTATCTGCTGTTGGACGTATGAAAGTTAATAGAAGATTAGGTCGTGACACTGTTAAAGGCCCTACTACTTTAACTAA
CGAAGATATTTTAGATACCATCAAAACTCTTGTTGATTTACGTAATGGTCGCGGAGAAATTGATGATATTGACCATTTAG
GAAATCGTCGTGTTCGTTGTGTAGGTGAGTTGGCTGAAAACCAATTTCGTTCTGGCTTAGTCCGTGTAGAAAGAGCTGTT
AAAGAGCATCTTGGACATGCAGAGTCTGAGAATTTATTGCCAAATGATTTGATTAATTCAAAACCGATTTCTTCTGCAAT
CAAAGAGTTCTTTAGCTCTAACCAATTATCACAATTTATGGATCAAACAAATCCATTGTCAGAAATTACGCACAAACGTC
GTGTATCTGCTTTGGGTCAAGGTGGTCTAACACGTGAGCGTGCTGGGTTTGAGGTTCGTGACGTGCATCCAACTCACTAT
GGACGTGTATGCCCAATCGAAACTCCAGAGGGTCCAAACATTGGTTTGATTAACTCTATGGCTCTATATGCTCGCCAAAA
TGAATATGGTTTCTTAGAAACTCCATATCGTAAAGTAGAAAATGGTCGTGTAGTAGATCAGATTGATTATTTATCGGCTA
TTGAAGAGAGCAAATATGTTATTGCTCAGGCGAATGCAAATCTTGATGCTAAAGGTAAATTCATAGACGATTTGATTGCG
TGTCGTCAAGCTGGTGAGACTATGCTTATGTCACCAGATAAGGTTGAATATATTGACGTTGCACCTTCACAAATCGTCTC
AGTTGCGGCTTCATTGATTCCGTTCCTTGAACATGATGACGCAAACCGTGCACTTATGGGCGCAAACATGCAACGTCAAG
CTGTTCCTTGCTTAAGACCTCAAAAACCATTGGTAGGTACAGGTATTGAGCGAACAGTAGCGGTTGACTCAGGTACTACT
GTTCAAGCTACTCGTGGTGGTCAAGTTGACTTTGTAGATTCAGAGCGTATCGTAATTCGCGTTAACGATGATGAAAGCAA
ATCAGGTAGTGTGGGTGTAGATATTTATAATTTAACTAAATACACTCGTTCAAACCAAAATACAAATATCAATCAACGTC
CTATCGTTAAGAAAGGTGATATTGTTGAACGCGGTGATGTTATTGCAGATGGTGCGTCAACTGACCTGGGAGAGCTTGCA
CTTGGTCAAAACATGCTTATCGCATTTATGCCATGGAATGGTTATAACTTTGAGGACTCGATTCTTATTTCCGAAAAAGT
TATCGCAAACGACAGATACACATCAGTTCATATTGAGGAACTTTCAGTTGTTGCTCGTGAAACTCAATTAGGTGATGAAG
AGATTACTCGAGATATTCCTAACTTAGCTGCTGAACAAATCAATAGATTGGATGAATCTGGTATTGTACATATCGGTGCT
GAAGTTCGTGCACGCGATGTATTAGTAGGAAAAGTAACACCTAAGGGTGAGACTCAACAAAGCCCTGAAACTAAGTTGCT
TCGTGAAATATTCCAAGATAAAGCTTTAGACGTTAAAGATACTTCTTTACGCGTGCCATCGGGTATGGTTGGTACTGTTA
TCGATGTTCAAGTTCTTACAGGTAAACGTGTAGAAAGAGATAAACGTGCACAATCAATTATTGAAGAAGAATTACGTCGT
TATCGTCAAGATCTAGATTCTCAACTTCGAATTGTTGAGAAAGATATGTTCAACCGTTTACGTAAAGTGCTTATAGGTAC
TAAAGCAAATGGTGGTCCAAATTCATTAGCAAAAGGTGCGAAAGTTACGGAAGATTATTTAGAAAATCTTCCAACATGGG
ACTGGTTTGATATTCGTCCTGTAGATGAAGACGTAGCTGTTATTCTCGAGCAAGCAAAAGATTCAATCGAGAAAAAACGT
CAAGAATTTGATGTACGTTTTGAAGAAAAACAGAAAAAACTTACTCAAGGTGATGAATTACCACCAGGCGTTCGCAAGAT
GGTTAAAGTTTTCCTTGCTGTTAAACGTCGTTTACAGCCTGGAGATAAAATGGCAGGCCGCCACGGTAATAAAGGGGTGG
TATCGAGAATATTGCCAGTAGAGGATATGCCTCATATGGCAGATGGAACACCAGCAGATATCGTTCTAAACCCTTTAGGC
GTGCCTTCGCGTATGAACGTGGGTCAGGTACTTGAAGTTCATCTAGGATGGGCAGCAAAAGGTATTGGACAACGTATTGC
TGACATGCTGGCTGAAGAGCGTAAAAATCAAGCTTCTGAGATTCGTAAATATTTAGAAAAAGTGTATAACAGCACTGGTA
AATCGGAATCTCTCAAAGAATTGACTGATGAGCAAATCATCGAAATGGCACATAATCTTAAAGATGGTATACCGTTTGCA
ACTCCTGTGTTTGACGGTGCTACTGAAGAAGAGATTAATGGCATGCTAGAGCTTGCTTATCCAGATGATATTAAAGAGAA
ATTGAAGCTTACAGATTCTCGTACTCAAGCTTATTTGATAGATGGACGCACTGGTGAACCTTTTGAAAGACCAGTAACCA
TCGGTTATATGCACTACTTGAAACTACACCATTTGGTAGACGATAAGATGCATGCTCGTTCTACAGGTTCGTACTCACTT
GTTACTCAACAGCCATTGGGCGGTAAAGCTCAGTTTGGTGGTCAGCGCTTCGGTGAGATGGAGGTGTGGGCACTTGAGGC
TTATGGTGCAGCATTTACACTTCAAGAAATGCTCACAGAAAAATCAGATGATATGGAAGGTCGTAACAACGTTAATCGCA
ACATTATCCAAGGCGATCACGTTATCGATGCAGGTATGCCAGAATCATTCAATGTAATTGTTAAAGAGATCAGGTCACTT
GGTCTTGATATGGAGTTGGAGGGTAAACAGTAA

Protein sequence : 
MSYSFTEKKRIRKSFAKRQVVQDVPYLLETQIQSYRSFLQKDLTPSKRAEIGLQAAFKSIFPIESNNGSARLEFVSYVLK
EPPFDVKECQLRGLTYYSGLYAKVRLEILDREASKPTVKEVKEEEVYMGDLPLMTDNGSFIINGTERVIVSQLHRSPGVF
FEHDKGKNHSSNKLLFSARVIPYRGSWLDFEFDHKDYLYFRIDRRRKMPVTILLKAIGMTSDDILSTFFEFSKYELKDDG
AVLNFLPERLKGEVARFDIVDKKGNVIVPKDKRINSKHLRDIAAAKLTKLPVPDDYLVGQIIAKTIIDEETGEILVQSNT
EITESVLAQLRKASIKEFETLFTNELDHGAYISSTLAIDETLDQTAARKAIYKMMRPGELPADDAVESLFNRMFYNADTY
DLSAVGRMKVNRRLGRDTVKGPTTLTNEDILDTIKTLVDLRNGRGEIDDIDHLGNRRVRCVGELAENQFRSGLVRVERAV
KEHLGHAESENLLPNDLINSKPISSAIKEFFSSNQLSQFMDQTNPLSEITHKRRVSALGQGGLTRERAGFEVRDVHPTHY
GRVCPIETPEGPNIGLINSMALYARQNEYGFLETPYRKVENGRVVDQIDYLSAIEESKYVIAQANANLDAKGKFIDDLIA
CRQAGETMLMSPDKVEYIDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPQKPLVGTGIERTVAVDSGTT
VQATRGGQVDFVDSERIVIRVNDDESKSGSVGVDIYNLTKYTRSNQNTNINQRPIVKKGDIVERGDVIADGASTDLGELA
LGQNMLIAFMPWNGYNFEDSILISEKVIANDRYTSVHIEELSVVARETQLGDEEITRDIPNLAAEQINRLDESGIVHIGA
EVRARDVLVGKVTPKGETQQSPETKLLREIFQDKALDVKDTSLRVPSGMVGTVIDVQVLTGKRVERDKRAQSIIEEELRR
YRQDLDSQLRIVEKDMFNRLRKVLIGTKANGGPNSLAKGAKVTEDYLENLPTWDWFDIRPVDEDVAVILEQAKDSIEKKR
QEFDVRFEEKQKKLTQGDELPPGVRKMVKVFLAVKRRLQPGDKMAGRHGNKGVVSRILPVEDMPHMADGTPADIVLNPLG
VPSRMNVGQVLEVHLGWAAKGIGQRIADMLAEERKNQASEIRKYLEKVYNSTGKSESLKELTDEQIIEMAHNLKDGIPFA
TPVFDGATEEEINGMLELAYPDDIKEKLKLTDSRTQAYLIDGRTGEPFERPVTIGYMHYLKLHHLVDDKMHARSTGSYSL
VTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTEKSDDMEGRNNVNRNIIQGDHVIDAGMPESFNVIVKEIRSL
GLDMELEGKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 63
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 78
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 70
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 70
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 65
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 64
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 63
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 63
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 63
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 63
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 63
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 62
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta AM180355.1.gene120.p Protein 1e-179 46
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 1e-179 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 7e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 1e-180 45
TASI_1560 YP_004875321.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 8e-180 44