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Name : rpoB (MEALZ_3360) Accession : YP_004918606.1 Strain : Methylomicrobium alcaliphilum 20Z Genome accession: NC_016112 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 3872530 - 3876606 bp Length : 4077 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; PubMedId : 9893021; Product type e : enzyme DNA sequence : ATGGCCTACTCTTTTACCGAAAAAAAACGCATTCGTAACAACTTTGGCAAAGGTACGGAAGTACTCGATGTGCCTTATCT TTTAGCGACGCAAATCAATTCCTACGCAAGTTTTCTACAATCCGGTATGTCCCCGGAAAAACGATTGAATGTAGGTTTGC ATGCTGCTTTTTCCAGTGTTTTTCCAATAGAAAGTCATTCCGGGTATGCGGTTCTGGAATATGTAAAATACCGGTTAGGA GAGCCGACATTCGACGTCAGGGAGTGTCAACAAAGGGGGGCAACTTTTGCGGCGCCGCTGAGAGTGTTGGTGCGCTTGGT CATTTACGATAAAGACGCGCCTGGAAGCACGAAAGTCGTTAAGGATATCCGGGAGCAGGAAGTCTACATGGGCGAGTTGC CGTTAATGACCGATAACGGAACTTTCGTCATTAATGGAACCGAGCGGGTAATCGTTTCTCAGTTACATCGATCTCCAGGC GTGTTTTTTGATCACGATAAAGGTAAAACGCATTCATCAGGAAAGTTATTATTCAACGCAAGAGTTATCCCTTATCGCGG TTCTTGGCTTGATTTCGAATTCGATCACAAAGATTGTGTCTATGTCAGAATAGATAGACGTAGAAAAATTCCGGCAACGA TCTTGTTAAGAGCGCTGGGTTATAATAACGAAGAAATGATGGATATTTTCTTCGAAACCAATCGCTTTGTCTTAACGGGT GATAGTTGTTTGTTCGATTTGGTGCCGGAGCGTCTGAGAGGCGAAATTGCAGCTTTCGACTTTAAGCATGACGGAAAGGT TCTTATCGAAGAAGGGCGTCGGATAACGGCAAAACATATACGCCAATTAAAAGAAGCGGGCGTCACTCAAATCGAAGTCC CTAAAGGTTATTTACACGGAAAAATATTAAGCCATAATCTGATCGATGAATCGACAGGTGAGCTGCTTGCCAATGTCAAT GATGAGCTTACCGAGGAGTTGCTCGATAAAATCATAGATAGCGGTATACAAGAACTAAACACGATTTATGTCAACGATCT GGATAGGGGGCCCTATATCTCGAACGCGATGCGTTTGGACACGAGTAGCACGCAACTGGAAGCGTTAGTTGAAATTTATC GTATGATGAGACCGGGAGAGCCGCCGACAAAAGAATCAGCGGAAAACCTGTTTCAAAACCTGTTTTTTACCGAAGACCGT TACGATTTGTCGACCGTCGGGCGTATGAAATTCAATCGGCGCCTGGGTCGTCAAGAAACAACCGGAGAGGGCACGCTCAG CAAGGAAGATATCATTGATGTATTAAAGGAGTTGATCAATATCCGAAACGGAAACGGTAATGTCGATGATATCGATCATT TGGGTAACCGAAGAGTCCGTTCGGTTGGCGAGATGATCGAGAACCAATTCCGAGTTGGCTTAGTCAGGGTAGAGCGAGCG GTTAAAGAACGGCTGACATTAGCCGATTCCGAAGGCCTGATGCCGCAGGAAATTATCAACGCGAAACCGGTATCTGCGGC GGTTAAAGAGTTTTTCGGCTCAAGCCAGCTGTCGCAGTTCATGGATCAAAATAATCCGCTTTCTCAGGTTACGCACAAGC GCCGGGTATCGGCTTTGGGTCCGGGTGGATTGGCGCGCGAGCGTGCCGGTTTCGAAGTGCGCGATGTTCATACCACGCAT TACGGACGCGTTTGCCCGATCGAAACGCCGGAGGGACCGAATATCGGTTTGATCAACTCATTGGCCGTTTATGCGCGCAC CAACGAATATGGCTTTCTTGAAACGCCCTATCGAAAAGTTGTCGATGGAAAACTAACCGATCAGGTTGAATATCTCTCGG CGATCGAAGAAGGGGAGTTTGTCATTGCTCAGGCTGCTGTGCCGGTCGATGCGGACGGTCGTCTAAAAGAAGGACTAGTA TCATGCCGTTATAAAGACGAATTTACATTGTCCATGTCCGATACCGTGCAATACATGGACGTATCGTCTAAACAAATAGT CTCTGTTGCGGCGTCTATCATCCCATTCTTGGAGCACGACGACGCGAATCGAGCGTTAATGGGGTCGAATATGCAGCGGC AAGCGGTTCCGACTCTAAGAGCCGAGAAACCGCTAGTGGGAACGGGTATGGAACGCACGGTAGCAAAGGATTCCGGGGTG GCTGTCGTAGCTACGCGAGGCGGAACCATTGAGGCCGTTGATGCCGCTAGGGTTGTGGTCAGGGTGAATGATGCCGAAAC CGAGTCAGGTGAGCCGGGGGTCGATATTTATAATCTGACCAAGTATACGCGGTCCAACCAAAATACCTGTATTAACCAAA AACCATTGGTCAAGCTTGGCGACATCGTCAATGCGGGAGATATATTAGCCGATGGGCCTTCGACCGATATTGGCGAATTG GCTTTGGGTCAAAATATGCTTGTTGCTTTCATGCCTTGGAATGGATACAACTTCGAGGATTCGATTTTAGTTTCCGAAAG GGTTGTTAAAGAAGATCGTTTTACGACTATCCATATTGAAGAAAAAACCTGCGTTGCGAGGGATACTAAATATAACCCGG AAGAGATTACCGCGGACATTCCAAACGTCAGCGAAGAAGCCTTATCGAAATTGGATGAGTCCGGGATCGTTTATGTCGGT GCCGAGGTCAAAGGCGGTGATATTCTGGTCGGTAAAGTAACTCCTAAAGGTGAAACGCAATTAACGCCTGAGGAAAAGCT ATTGCGTGCAATTTTCGGTGAGAAAGCTGCCGACGTAAAAGATACGTCATTAAGAGTACCGAACGGTGTTGAAGGGACGG TTATCGATGTCCAAGTCTTCACGCGAGATGGTGTTAAGAAGGATAAGCGTGCGCTCGAAATAGAAGAAGAGCAAATTAAG CGTTATAGAAAAGATCTTGACGATCAGCTAAAAATTGTCGAAAAGGACATATATGCGCGAGTCGCTAGATTAATCGTCGG CAAGAAGGCTTTATCCGGGCCGGATAATTTATCTTCAGGCGCTGTCGTAAATCAAGAATATCTGGATAGATTGAGGCCTT CTCAATGGCTGCAAATCAAAATGGAAGATGAAAACATCAATGTCCAATTGGAAGGAGTCATCGAGCAAATCGAGCAACAG AGAAAGGATTTCGATGTCAAGTTTGATATCAAGCGCAAAAAGATCACCATGGGCGATGATTTGCCGCCCGGTGTCTTAAA AATGGTTAAGGTCTACCTCGCGGTTAAGAGAAGAATACAGTCGGGCGATAAAATGGCTGGGCGACATGGAAATAAAGGGG TTATTTCCATGATTAGACCGATCGAAGACATGCCTTATACAGCCGATGGTAATCCGGTCGATATCGTATTGAATCCTCTC GGGGTTCCGTCACGTATGAATGTGGGTCAGGTGTTGGAAACTCATTTGGGTTGGGCGTCCAAAGGTTTGGGTATCAAGAT TGGTAAAATGCTTGAGGCTCAAGCAAAAATCGTTGAAATTAGAGGGTTTTTAGAAAAAATCTATAATAGCAGCGGTCGTA AGGAAGACTTGAATGCCTTGACCGATAAAGAGATCCTCGAGCTAGCCCATAATTTGGTTGAAGGGGTACCGATGGCGACT CCTGTGTTCGATGGCGCTAGCGAAGATGAAATTAAAACCATGTTGAGACTGGCAGATTATCCTGAACATGGTCAAACCGT ACTCTATGACGGTTTGACCGGCGAACCGTTCGAACGCGAAGTTACCGTTGGTTACATGTACATGTTGAAATTGAATCATT TGGTAGATGATAAAATGCATGCACGTTCTACCGGTCCTTATAGCCTGGTAACTCAACAGCCGCTGGGAGGAAAGGCTCAA TTCGGCGGACAACGATTCGGTGAAATGGAAGTCTGGGCTTTGGAGGCTTATGGGGCGGCTTATACCTTGCAGGAAATGTT GACTGTGAAATCCGATGATGTAACCGGTAGAACCAAAATGTATAAAAATATCGTTGATGGCGACCATAAAATGGAAGCCG GTATGCCGGAGTCGTTCAACGTCTTGATCAAAGAAATACGTTCACTCGGTGTCAATATTGAGTTAGAAAGCGATTAA Protein sequence : MAYSFTEKKRIRNNFGKGTEVLDVPYLLATQINSYASFLQSGMSPEKRLNVGLHAAFSSVFPIESHSGYAVLEYVKYRLG EPTFDVRECQQRGATFAAPLRVLVRLVIYDKDAPGSTKVVKDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPG VFFDHDKGKTHSSGKLLFNARVIPYRGSWLDFEFDHKDCVYVRIDRRRKIPATILLRALGYNNEEMMDIFFETNRFVLTG DSCLFDLVPERLRGEIAAFDFKHDGKVLIEEGRRITAKHIRQLKEAGVTQIEVPKGYLHGKILSHNLIDESTGELLANVN DELTEELLDKIIDSGIQELNTIYVNDLDRGPYISNAMRLDTSSTQLEALVEIYRMMRPGEPPTKESAENLFQNLFFTEDR YDLSTVGRMKFNRRLGRQETTGEGTLSKEDIIDVLKELINIRNGNGNVDDIDHLGNRRVRSVGEMIENQFRVGLVRVERA VKERLTLADSEGLMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALGPGGLARERAGFEVRDVHTTH YGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKVVDGKLTDQVEYLSAIEEGEFVIAQAAVPVDADGRLKEGLV SCRYKDEFTLSMSDTVQYMDVSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAKDSGV AVVATRGGTIEAVDAARVVVRVNDAETESGEPGVDIYNLTKYTRSNQNTCINQKPLVKLGDIVNAGDILADGPSTDIGEL ALGQNMLVAFMPWNGYNFEDSILVSERVVKEDRFTTIHIEEKTCVARDTKYNPEEITADIPNVSEEALSKLDESGIVYVG AEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAADVKDTSLRVPNGVEGTVIDVQVFTRDGVKKDKRALEIEEEQIK RYRKDLDDQLKIVEKDIYARVARLIVGKKALSGPDNLSSGAVVNQEYLDRLRPSQWLQIKMEDENINVQLEGVIEQIEQQ RKDFDVKFDIKRKKITMGDDLPPGVLKMVKVYLAVKRRIQSGDKMAGRHGNKGVISMIRPIEDMPYTADGNPVDIVLNPL GVPSRMNVGQVLETHLGWASKGLGIKIGKMLEAQAKIVEIRGFLEKIYNSSGRKEDLNALTDKEILELAHNLVEGVPMAT PVFDGASEDEIKTMLRLADYPEHGQTVLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQ FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYKNIVDGDHKMEAGMPESFNVLIKEIRSLGVNIELESD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP000675.2.gene392.p | Protein | 0.0 | 72 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP001918.1.gene250.p | Protein | 0.0 | 71 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_002695.1.914942.p | Protein | 0.0 | 71 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP000034.1.gene3741. | Protein | 0.0 | 71 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP001138.1.gene4362. | Protein | 0.0 | 71 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP000647.1.gene4402. | Protein | 0.0 | 71 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP004022.1.gene2794. | Protein | 0.0 | 70 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_008702.1.4609796. | Protein | 0.0 | 69 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_011035.1.6448762. | Protein | 0.0 | 66 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | CP001581.1.gene3846. | Protein | 0.0 | 47 |
| rpoB | YP_004918606.1 | DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (transcriptase subunit beta) (RNA polymerase subunit beta) | NC_012469.1.7686402. | Protein | 0.0 | 44 |
