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Name : rpoB (MADAR_434) Accession : YP_004928558.1 Strain : Blattabacterium sp. MADAR Genome accession: NC_016146 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta subunit Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 431427 - 435242 bp Length : 3816 bp Strand : - Note : annotation based on TIGRFAM rpoB protein motif and similarity to AA sequences in nr DNA sequence : TTGGTGAATACAGAAAAAGAATCAGAAAGAATTACTTTTGCATCAGTGAAAGAAAAAGTAGAGTATCCTGATTTTTTGGA TATTCAAATAAAATCTTTTAAAGAGTTTTTTCAAATTGATACAAAACCGGAAGAAAGAAAAAACGAAGGATTATTTAAAG CTTTTACAGAAAATTTTCCAATTTCTGATGCAAGGAATTCCTTTGTTTTAGAATTTAAAGGATATTCTATAGATTATCCT AGATATTCTATAGAAGAATGTATTGAAAGGGGGTTGACTTATAGTGTTCCTTTAAAGGCAAAATTGAAACTGTATTGTAC GGATCCAGAACATGAGGATTTTGAAACTGTATATCAAGATGTTTATTTAGGAAATTATCCCTATATGACTCCTTCTGGAT CTTTTATTTTTAATGGATCGGAACGTGTAATTGTTTCTCAATTACATCGTTCTCCTGGTGTCTTTTTTGGACAATCTCAT CATGCAAATGGAACAAAATTATATTCTGCAAGAGTTATTCCTTTTAAAGGTTCTTGGATTGAATTTGCTACAGACATTAA CAATGTTATGTATGCGTATATTGATAGAAAGAAAAAATTACCAATGACAACTTTATTGCGTGCTATTGGATATGAAAGAG ACAAAAATATATTAGAAATATTTGATTTAGCAGAAGAATTTGAAGTTAATGAAGAAAATAAAAAGAATATTTTGAACAGA ATTTTAGCTGCTAGAATATTGAATATTTGGCATGAAGATTCTGTGGATGAAGAAACAGGAGAAGTTATATCCATAGAAAA AAATGAAATTCTAATAGATAGAGATGTTATTCTAAAAAAAGAGCATATTGATCTAATTATTCAACATAAGATCAAAATAA TTTGGTTGCATAAAGAAAGTGGAAAGAAGAAAGACTATTCTATTATTTATAATACCTTGCAAAAAGATCCTACAAATTCG GAAAAGGAAGCGGTAGAATATATATATAGACAACTTAGGAATACAGATCCACCAGATGAAGAAACAGCTAGAGGAATTAT CGATAAGCTATTTTTTTCCGATTCTAGATATAGTTTAGGACCTGTAGGGAGATATCGATTAAATAAACGTCTTGGTTTAA ATATTGATCCAAATCACTTAGTGTTGACTAAAGAGGATATTATTGCTATAGTTGAACATTTGAATGCTTTGTTTAATTCT AAAAGAGAGGTAGATGATATAGATCATTTGTCCAATAGACGTGTTAGAACTGTAGGAGAACAACTTTATACTCAATTTAG TATTGGTTTATCCAGGATGTCTAGAACTATTAGAGAACGTATGAATGTTCGAGATAATGAGGTTTTTATGCCAATAGATT TGATTAATTCTAAAACGTTATCTTCCGTTATAAATACTTTTTTTGGAACCAATCAATTATCTCAATTTATGGATCAGACT AATCCATTGTCTGAAATAACACACAAAAGAAGATTATCGGCTTTAGGTCCTGGAGGATTATCTAGGGAAAGAGCGGGGTT TGAAGTAAGAGATGTGAATTATTCTCATTATGGAAGGTTATGCCCTATTGAAACTCCAGAAGGGCCAAATATTGGATTAA TTTCTTCTCTTTCTGTTTTTGCAAAGGTAAATAAAATGGGTTTTGTAGAAACTCCTTATAGGTCAACAAAAAATGGAAAA GTAGATTTTAAATCTAAGGTAAAATATTTAAGTGCAGAAGAGGAAGAAGGAAAAATTATCGCACAAGCCAATGCTGTAGA TAGATATGGTAATTTTATTTCTGATAGAATTATAGCTCGTGAAGATGGAGATTTTCCAATAGTAAAACCGGAACAAGTAG ATTATGTAGATGTTTATCCCAATCAAATAGCCTCCATATCTGCTTCTTTAATTCCTTTTTTGGAACATGATGATGCGAAT AGAGCACTTATGGGATCCAATATGATGCGTCAAGCCGTTCCACTATTGAAACCTGAACAACCTATTGTAGGAACAGGATT AGAAAAAGTAGTAGCAAGGGATTCTCGTATTTTAATTAATGCAAGAAGTAATGGAATAGTAGAATACATTGATGCAAGAA AAATAATTATTCGTTATGATCAAACGGAAAAAGAATCTATGGTGAGTTTTGATTCTGAAATTCTGGTTTATGATTTGATC AAATTTAGAAAAACCAATCAAAATACATGTATCAATTTAAAACCTATTGTTAAAAAAGGAATGAGAATAGTAAAAGGACA AATATTGTGTGAAGGATATGCTACTGAAAATGGAGAATTGGCTTTAGGAAGGAATTTAAGAGCTGCTTTTATTCCTTGTA ATGGATACAATTTTGAAGATGCAGTACTTATTTCAGAAAAGGTAGTGAGTGAAGATTGGTTTACGTCTATTCATATAGAG GAGTATTCTTTAGATGTCCGTGATACAAAATTAGGAATGGAAGAATTAACCAATGACATTCCCAATGTTAGTGAAGAAGC TACTAAAAATTTGGATGAAAATGGGATTATTCGTGTTGGAGCCGAAGTGAAACCTGGTGATATACTTATTGGAAAAATAA CTCCAAAAGGAGAATCTGATCCTACTCCAGAAGAAAAATTATTAAGAGCTATTTTTGGAGATAAAGCAGGAAATGTAAAA GATGCTTCTTTAAGAGCAGAACCTTCCTTATTTGGAGTTGTAATTGATACAAAACTATTTACTAGAAGCATAAAAGATAA AAAATCTAGAGCTAAGGATAGAATGCAGATAGAACGTCTAGAAAAAGAACACAATAAAAAATTTTCGGATTTAAGAAATA AGTTATTACAAAAATTGTGTACTATTTTGCATGGAAAGATTTCTAAAAAAATATTTTGGAATAATGAAAGAAAAATAATA GAGAAAGGAACTAAATTTACCTTAAAATTACTTAATAGAATATCGGATTATTCAGTAATAGATCCATACAATTGGACTGA TGATGTAGAAACCAATAATCTTGTATCGGAAGTATTACACAATTATGAGATTTCGGTTAATGATTTAAATAGTGTTTTGA AACATAAAAAAATTTCTATTACGGTTGGAGATGAATTACCTTCCGGTATTGTAAAAATGGCTAAAGTTTATATTGCAAAA AAAAGAAAGTTAAAAGTAGGAGATAAAATGGCTGGTAGGCATGGAAATAAAGGAGTAGTAGCGCGTATCCTTCGTGAAGA AGATATGCCATTTTTAGAAGATGGAAGTCCCGTAGATATTGTTTTAAATCCATTAGGAGTTCCGTCTAGGATGAATATTG GACAGATATATGAAACAGTATTAGGTTGGGCGGGATATAAGTTAAATACTAAATTTGCTACACCTATATTTGATGGAGCT AGCATAGAAAAAATATCGGAATATACGGATAAAGCTGAAATTCCTCGTTTTGGAACAACCTATTTGTTTGATGGAGGAAC TGGAGAGAGATTTGATCAACCTGCAACAGTAGGAGTCATATATATGTTAAAGCTTGGTCATATGGTAGATGATAAAATGC ATGCTCGTTCTATAGGTCCTTATTCTCTTATTACTCAACAACCTTTAGGAGGGAAATCTCAATTCGGAGGTCAACGTTTT GGAGAAATGGAAGTTTGGGCTTTAGAAGCTTTTGGAGCTTCCAATATATTACGTGAAATATTAACGGTGAAATCAGATGA TGTTATAGGAAGGGCTAAAACTTATGAAGCAATAGTTAAAGGAGATCCTATGCCAGAACCAAATAATCCAGAATCTTTTA ATGTTTTATGTTATGAATTGAAAGGATTAGGTTTGGATATTAATTTAGAAGAGTAA Protein sequence : MVNTEKESERITFASVKEKVEYPDFLDIQIKSFKEFFQIDTKPEERKNEGLFKAFTENFPISDARNSFVLEFKGYSIDYP RYSIEECIERGLTYSVPLKAKLKLYCTDPEHEDFETVYQDVYLGNYPYMTPSGSFIFNGSERVIVSQLHRSPGVFFGQSH HANGTKLYSARVIPFKGSWIEFATDINNVMYAYIDRKKKLPMTTLLRAIGYERDKNILEIFDLAEEFEVNEENKKNILNR ILAARILNIWHEDSVDEETGEVISIEKNEILIDRDVILKKEHIDLIIQHKIKIIWLHKESGKKKDYSIIYNTLQKDPTNS EKEAVEYIYRQLRNTDPPDEETARGIIDKLFFSDSRYSLGPVGRYRLNKRLGLNIDPNHLVLTKEDIIAIVEHLNALFNS KREVDDIDHLSNRRVRTVGEQLYTQFSIGLSRMSRTIRERMNVRDNEVFMPIDLINSKTLSSVINTFFGTNQLSQFMDQT NPLSEITHKRRLSALGPGGLSRERAGFEVRDVNYSHYGRLCPIETPEGPNIGLISSLSVFAKVNKMGFVETPYRSTKNGK VDFKSKVKYLSAEEEEGKIIAQANAVDRYGNFISDRIIAREDGDFPIVKPEQVDYVDVYPNQIASISASLIPFLEHDDAN RALMGSNMMRQAVPLLKPEQPIVGTGLEKVVARDSRILINARSNGIVEYIDARKIIIRYDQTEKESMVSFDSEILVYDLI KFRKTNQNTCINLKPIVKKGMRIVKGQILCEGYATENGELALGRNLRAAFIPCNGYNFEDAVLISEKVVSEDWFTSIHIE EYSLDVRDTKLGMEELTNDIPNVSEEATKNLDENGIIRVGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGNVK DASLRAEPSLFGVVIDTKLFTRSIKDKKSRAKDRMQIERLEKEHNKKFSDLRNKLLQKLCTILHGKISKKIFWNNERKII EKGTKFTLKLLNRISDYSVIDPYNWTDDVETNNLVSEVLHNYEISVNDLNSVLKHKKISITVGDELPSGIVKMAKVYIAK KRKLKVGDKMAGRHGNKGVVARILREEDMPFLEDGSPVDIVLNPLGVPSRMNIGQIYETVLGWAGYKLNTKFATPIFDGA SIEKISEYTDKAEIPRFGTTYLFDGGTGERFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKSQFGGQRF GEMEVWALEAFGASNILREILTVKSDDVIGRAKTYEAIVKGDPMPEPNNPESFNVLCYELKGLGLDINLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 48 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 48 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 46 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| rpoB | YP_004928558.1 | DNA-directed RNA polymerase beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 44 |
