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Name : secD (DSC_06420) Accession : YP_004929976.1 Strain : Pseudoxanthomonas spadix BD-a59 Genome accession: NC_016147 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1181422 - 1183308 bp Length : 1887 bp Strand : + Note : COG0342 Preprotein translocase subunit SecD DNA sequence : ATGCTTGAGTTTCCCCGCTGGAAGTATGTCCTGATCGTGCTGGTGCTGGTGTTCAGCACGGTCTACGCGCTGCCCAACAT CTATCCGCAGGATCCTTCGGTCCAGATCACCGCCAGCCGCGGCGCGGCCATCGATGAGGCGCTGCGGCAGAAGGTCGCCG CGGCGCTGGCGACCGTGCAGATCACGCCCAAGCAGCTGGAGACCCGCGACGGCGACCTGCTGGTGCGCCTGGCGTCGCCC GAGGCGCAGGCCAAGGCCAACGACGTGCTGCGCCAGTCGCTGGGCGATGACTACACCGTGGCGCTGAACCTGGCGCCCAC CGTGCCGCGCTGGCTCTCCAGCCTGGGCGCCAAGCCCATGGTGCGTGGCCTGGACCTGCAGGGCGGCGTGCACTTCACCT TGCAGGTGGACCAGAAGGCGGCGCTGGACAAGCGCGTGGAGGCCTATGTCGAGGACGCCCGGGTGACACTGCGTGACGCC AGGATCCGCGTCGATTCGGTCACCCGCGGCCCTGACAACACCATCGTGGTCAACGTGGCCCAGGGCCAGGACGTGGCTGC GGCGCGCAAGGCGCTGGCCACCACGCTCAGCGCCAGCAGCAGTGCCAGCGGGGCGCTGGTGGGTGCCTCGCCACTGAGCT ACCAGGTGCAGGGCAACCGCATCACCATCGGTCTGCCGGAAAGCGAGCTGGCCCGCATCTCCGGCGACGCCATCGCCCAG AACATCGCCACCCTGCGCAACCGGGTCAACGCGCTGGGCGTGGCCGAACCGGTGATCCAGCAACAGGGCAGCGACCGGAT CGTGGTCGAACTGCCCGGCGTGCAGGACACCGCGGCGGCCAAGCGCCTGATCGGCGCCACCGCCACGATCGAGTTCCGCG CGGTGGTCGATGGTGATGCGCTCGAGGCCCAGCGCACCGGCAACATTCCGCCGGAAGCCAAGCTCTACCCGTTGCGCGAT GCGCCCGGTGTCCCGGTGCTGCTGAACAAGCGCGTGCTGGCCTCGGGCGAGCAGATGGTCAATGCCGTGGCCACGGTGGA CCAGAACGGCCAGCCCGCGGTGGACATCACCCTGAACAACGTGGCCGGCCAGCGCATGTTCGATTTCACCAGCGCCAATG TCGGCAAGAAGATGGCGGTGGTCTACATCGAGCGCATTCCGGAAGTGAAGGTGGTTGACGGCAAGGAAGTGCGCAGCGTG CGGGTGAGCGAGCAGGCGCTGGCGCCGTCCACCATCCAGGGCGTCTTCAGCAAGAACTTCCAGACCACCGGCCTGAGCAA GGACGAAGCCGACAACCTGGCCAAGCTGCTGCGCGCCGGTTCGCTGGCCGCGCCCATGAGCTTTGTCGAGGAGTACGTGA TCGGCCCCAGCCTGGGCGCGGAGAACGTCGAGCGCGGCATCAAGGCGGTGGTGTATTCGTTCCTGTTCACCCTGGTGTTC TTCACCATCTACTACCGCGTGTTCGGCGCGATCACCTCGCTGGCGCTGCTGTTCAACCTGCTGATCGTGGTGGCGGTGAT GTCGCTGTTCGGCGCGACCATGACCCTGCCCGGTTTCGCCGGCCTGGCGCTGTCGGTGGGCCTGTCGGTGGATGCCAACG TGCTGATCAACGAGCGCATCCGCGAGGAACTGCGCAACGGCATGCCGCCCAAGTCAGCGATCAACGCCGGCTACGACAAG GCCGGCGGCACGATCCTGGACGCCAACCTCACTGGCCTGATCGTGGGCATCGCGCTGTTCGCCTTCGGCACCGGACCGCT GCGCGGCTTCGCCCTGACCATGATCATCGGCATCTTCGCCTCGATGTTCACCGCGATCACCGTTTCGCGTGCGCTGGCGG TGCTGATCTACGGCCGCCGCAAGAAGCTCACTTCCGTTGCCATTTGA Protein sequence : MLEFPRWKYVLIVLVLVFSTVYALPNIYPQDPSVQITASRGAAIDEALRQKVAAALATVQITPKQLETRDGDLLVRLASP EAQAKANDVLRQSLGDDYTVALNLAPTVPRWLSSLGAKPMVRGLDLQGGVHFTLQVDQKAALDKRVEAYVEDARVTLRDA RIRVDSVTRGPDNTIVVNVAQGQDVAAARKALATTLSASSSASGALVGASPLSYQVQGNRITIGLPESELARISGDAIAQ NIATLRNRVNALGVAEPVIQQQGSDRIVVELPGVQDTAAAKRLIGATATIEFRAVVDGDALEAQRTGNIPPEAKLYPLRD APGVPVLLNKRVLASGEQMVNAVATVDQNGQPAVDITLNNVAGQRMFDFTSANVGKKMAVVYIERIPEVKVVDGKEVRSV RVSEQALAPSTIQGVFSKNFQTTGLSKDEADNLAKLLRAGSLAAPMSFVEEYVIGPSLGAENVERGIKAVVYSFLFTLVF FTIYYRVFGAITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRNGMPPKSAINAGYDK AGGTILDANLTGLIVGIALFAFGTGPLRGFALTMIIGIFASMFTAITVSRALAVLIYGRRKKLTSVAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-105 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-106 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-106 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-106 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-106 | 43 |
