Gene Information

Name : Vch1786_II0901 (Vch1786_II0901)
Accession : YP_004939873.1
Strain :
Genome accession: NC_016446
Putative virulence/resistance : Virulence
Product : type VI secretion system protein ImpB
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 889678 - 890184 bp
Length : 507 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTAAAGAAGGAAGTGTAGCTCCCAAAGAGCGGATTAATATCAAGTATATTCCGGCGACGGGGGATGCACAGGCTGA
GGTTGAGCTACCACTCAAAACCCTAGTTGTAGGTGATTTCAAAGGGCATGCGGAGCAAACCCCATTGGAAGAGCGTGCAA
CAGTCACGGTAGATAAGAACAACTTTGAAGCCGTAATGCGCGAGAGCGAGCTGAAAATCACCGCCACGGTGAAAAACAAG
CTGACTGATGATGAGAATGCCGAGCTTCCTGTTGAACTCAATTTCAAATCCTTAGCCGACTTCGCTCCTGATGCGGTGGC
ATCACAAGTTCCAGAACTGAAAAAATTGATTGAGTTGCGTGAAGCGTTAGTTGCCCTTAAAGGGCCGCTAGGCAACATTC
CCGCATTTCGTGAGCGTTTACAGTCATTACTCAACTCAGAAGAGTCGAGAGAAAAGCTGTTGGCAGAACTGAATCTGCTC
AGTGGTCAAGAAGAGCCACAAGCGTAA

Protein sequence : 
MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHAEQTPLEERATVTVDKNNFEAVMRESELKITATVKNK
LTDDENAELPVELNFKSLADFAPDAVASQVPELKKLIELREALVALKGPLGNIPAFRERLQSLLNSEESREKLLAELNLL
SGQEEPQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 1e-36 50
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-38 49
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 8e-39 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Vch1786_II0901 YP_004939873.1 type VI secretion system protein ImpB VFG2092 Protein 1e-72 100
Vch1786_II0901 YP_004939873.1 type VI secretion system protein ImpB VFG2474 Protein 9e-41 56