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Name : rpoB (FCOL_10405) Accession : YP_004942681.1 Strain : Flavobacterium columnare ATCC 49512 Genome accession: NC_016510 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 2460570 - 2464382 bp Length : 3813 bp Strand : - Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit DNA sequence : ATGATATTAAATCAGACTGAAAGATTGAATTTTGCCTCGACAAAAAACATTCCGAACTATCCCGATTTCTTGGATGTTCA AGTGAAGTCGTTCAAGGATTTCTTTCAATTAGAAACGAAATCTGATGAAAGAGGCAACGAGGGGTTGTACAACACCTTTA TGGAAAACTTTCCAATCACTGATACGCGTAATCAGTTCGTATTAGAGTTCTTAGATTATTTTGTTGATCCTCCTCGTTAT ACAATTGAAGAATGTATAGACAGAGGTCTTACATACAGTGTGCCACTTAAAGCACGTCTGAAATTATACTGTACTGATCC AGAACACGAAGATTTTGAAACCATCGTTCAGGATGTGTATTTAGGTACTATTCCTTATATGACTCCGAGCGGTACTTTTG TTATTAATGGTGCTGAGCGCGTAGTTGTATCGCAATTACACCGTTCGCCAGGTGTATTCTTTGGTCAGTCTTTCCATGCC AATGGTACAAAATTATACTCTGCTAGAGTAATTCCTTTCAAAGGTTCTTGGATTGAATTTGCTACCGATATCAACAGTGT GATGTACGCTTATATCGATAGAAAGAAAAAATTACCTGTAACTACATTATTCCGAGCTATTGGTTTTGAGCGCGATAAAG ATATCTTAGAAATTTTTGACTTAGCGGAGGAAATTAAAGTATCTAAATCAGGTTTAAAGAAATATATCGGTCGTCGTTTA GCTGCGCGTGTTTTAAATACATGGCATGAAGACTTCGTAGATGAGGATACAGGTGAGGTAGTATCTATCGAGCGTAATGA AATTATCTTAGATCGTGATACGCTTTTAGATAAAGACAATGTAGAAGAAATTGTTGATGCTAATGTTAAGTCAATTTTAT TACATAAAGAAGATTTAAATACAGCTGATTATTCAATCATTCACAATACTTTACAAAAAGACCCTACCAACTCTGAAAAA GAAGCAGTAGAACACATTTACCGTCAATTGCGTAATGCTGAACCACCTGATGAAGAAACAGCTCGTGGAATTATCGAGAA ATTATTCTTCTCTGATCAGCGTTACAACTTAGGGGATGTAGGTCGTTACAGAATGAATAAAAAATTAGGTCTTGATATTC CTATGGATAAGCAGGTGCTTACTAAAGAGGATATCATTACTATCGTTAAATATTTAATCGAGTTAATTAACTCTAAAGCT GAGATTGATGATATTGATCACTTATCAAACCGTCGTGTTCGTACAGTAGGGGAACAACTATCTGCTCAGTTTGGTGTTGG TTTAGCTCGTATGGCTCGTACTATTCGTGAGCGTATGAACGTTCGTGATAACGAGGTGTTTACACCAATTGATTTGATCA ACGCGAAGACTTTGTCTTCTGTAATCAACTCATTCTTCGGTACGAACCAGTTATCTCAGTTTATGGACCAAACCAATCCA TTAGCAGAGATTACACACAAACGTCGTTTATCCGCTTTAGGTCCTGGAGGTTTATCTAGAGAGCGTGCTGGTTTCGAAGT TCGTGACGTTCACTATACGCATTACGGTCGTTTATGTCCGATTGAAACTCCAGAGGGACCAAACATTGGTCTTATCTCTT CATTAGGGGTATATGCTAAAGTTAACGGAATGGGATTCATCGAAACTCCATACCGTAAAGTAACGAATGGTCAAGTAGAT TTAGTCTCAGATCCTATTTACTTAAGTGCAGAAGAAGAAGAAGGTAAGTTAATTGCTCAGGCTAACATCGAAATGGATGA TACAGGAGTAATTACTACTGATAAAGTAATTGTTCGTGAAGAAGGGGACTTCCCTGTAGTTGATCCTTCTGCGGTTCATT ATACAGACGTTGCTCCTAATCAAATTGCTTCTATTTCAGCTTCATTAATTCCTTTCTTAGAACACGATGATGCAAACCGT GCCTTGATGGGGTCAAATATGATGCGTCAGGCGGTACCTTTATTACGTCCCGAATCTCCTATCGTGGGAACAGGTTTAGA ACGTCAAGTAGCGTCTGATTCAAGAGTGTTAATTAATGCAGAAGGAAATGGAGTAGTAGAGTATGTAGATGCTGATAAGA TTACTATCAAATACGAAAGAACAGATACTGAAAGAGCAGTAAGTTTTGATTCAGATGAAAAAACATATCAGTTAATAAAA TTCCGTAAAACGAATCAAAGTACTACTATCAACTTAAAACCAATTGTTAGAAAAGGAGATAAAGTTGTTAAAGGACAGGT ACTTTGTGAAGGATATGCAACGCAAAATGGGGAGTTAGCTCTTGGTAGAAACTTACAAGTAGCTTTCATGCCTTGGAAAG GGTACAACTTCGAGGATGCGATTGTGATTTCTGAAAAAGTGGTTCGTGATGATATCTTCACATCTATTCATATTGACGAC TATTCATTAGAAGTTCGTGATACAAAATTAGGTAATGAAGAGTTAACAAACGATATACCTAACGTTTCTGAAGAGGCTAC AAAAGACTTAGATGAAAACGGTATGATTAGAATTGGTGCCGAGGTAAAACCAGGTGATATTCTAATCGGAAAAATTACAC CAAAAGGGGAATCTGATCCTACTCCAGAAGAAAAGCTATTAAGAGCAATTTTCGGTGATAAAGCAGGAGATGTAAAAGAT GCTTCATTAAAAGCTTCTCCATCTTTACATGGTGTTGTTTTAGATAAAAAATTATTTGCAAGAGTTGTAAAAGACAAGCG CAAGCGCTCTCAAGAAAAAGATGAGTTAGCGGCTCTTGAAATGGAATACGAAACAAAATTTGTTGAACTAAAGGATCGTT TAATTGATAAATTATTCTTGATTGTTGATGGTAAAACCTCTCAAGGGGTAATGAACGATTTAGGTGAAGAAGTATTGCCA AAAGGTAAGAAATACACCAAAAAAATGTTACAAGCTGTTGAGGATTTTGCTCACTTAACAAAAGGGCAATGGGTTGCTGA TGACGAAACAAATGAAATGGTTAATGACTTAATTCACAATTATAAGATTAAGTTAAATGACTTACAAGGGGCGTTACGTC GTGAAAAATTTACGATTACTGTTGGGGACGAATTACCATCAGGGATCTTAAAGTTAGCAAAAGTTTATATTGCTAAAAAA CGTAAACTTAAAGTAGGTGATAAGATGGCAGGTCGTCACGGTAACAAAGGTATCGTGGCACGTATCGTTCGTCAAGAGGA TATGCCATTCCTAGAAGATGGAACACCAGTAGATATCGTATTGAATCCACTAGGGGTACCTTCTCGTATGAACATCGGTC AGATTTATGAAACCGTTTTAGGTTGGGCAGGTAAAAAATTAGGTAGAAAATATGCTACTCCAATTTTTGACGGTGCTTCT CTTGATGAGATCAACGCCTTAACAGATGAGGCTGGAGTGCCAAGATTTGGTCATACCTACCTATATGATGGTGGTACAGG AGAACGTTTCCATCAGCCAGCTACTGTAGGTGTTATCTATATGTTGAAATTAGGACACATGGTTGACGATAAGATGCACG CTCGTTCTATTGGTCCTTATTCATTAATTACGCAACAACCATTAGGAGGTAAAGCTCAGTTTGGGGGTCAGCGTTTTGGA GAGATGGAGGTTTGGGCACTTGAAGCGTATGGAGCATCAAGTACTTTACGAGAAATCTTGACTGTTAAGTCAGATGACGT GATAGGTAGAGCTAAAACTTACGAAGCAATCGTTAAGGGTGAAACTATGCCTGAGCCAGGATTACCAGAATCATTCAATG TATTAATGCACGAATTAAAAGGTCTTGGTTTAGACATCCGTTTAGAAGAATAA Protein sequence : MILNQTERLNFASTKNIPNYPDFLDVQVKSFKDFFQLETKSDERGNEGLYNTFMENFPITDTRNQFVLEFLDYFVDPPRY TIEECIDRGLTYSVPLKARLKLYCTDPEHEDFETIVQDVYLGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHA NGTKLYSARVIPFKGSWIEFATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKSGLKKYIGRRL AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTLLDKDNVEEIVDANVKSILLHKEDLNTADYSIIHNTLQKDPTNSEK EAVEHIYRQLRNAEPPDEETARGIIEKLFFSDQRYNLGDVGRYRMNKKLGLDIPMDKQVLTKEDIITIVKYLIELINSKA EIDDIDHLSNRRVRTVGEQLSAQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLGVYAKVNGMGFIETPYRKVTNGQVD LVSDPIYLSAEEEEGKLIAQANIEMDDTGVITTDKVIVREEGDFPVVDPSAVHYTDVAPNQIASISASLIPFLEHDDANR ALMGSNMMRQAVPLLRPESPIVGTGLERQVASDSRVLINAEGNGVVEYVDADKITIKYERTDTERAVSFDSDEKTYQLIK FRKTNQSTTINLKPIVRKGDKVVKGQVLCEGYATQNGELALGRNLQVAFMPWKGYNFEDAIVISEKVVRDDIFTSIHIDD YSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGAEVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKD ASLKASPSLHGVVLDKKLFARVVKDKRKRSQEKDELAALEMEYETKFVELKDRLIDKLFLIVDGKTSQGVMNDLGEEVLP KGKKYTKKMLQAVEDFAHLTKGQWVADDETNEMVNDLIHNYKIKLNDLQGALRREKFTITVGDELPSGILKLAKVYIAKK RKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIYETVLGWAGKKLGRKYATPIFDGAS LDEINALTDEAGVPRFGHTYLYDGGTGERFHQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKGLGLDIRLEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 48 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 47 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 45 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_009782.5559150.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002951.3236234.p0 | Protein | 8e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002953.2862188.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_013450.8613267.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_007793.3914836.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_003923.1002608.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_009641.5330265.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002758.1120515.p0 | Protein | 3e-173 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_010079.5776819.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002952.2860169.p0 | Protein | 4e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_007622.3792928.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_002745.1123305.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_007795.3920377.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_009632.5315067.p0 | Protein | 3e-174 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_009487.5169226.p0 | Protein | 5e-173 | 43 |
| rpoB | YP_004942681.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 4e-169 | 41 |
