Gene Information

Name : BYI23_A024550 (BYI23_A024550)
Accession : YP_004978270.1
Strain :
Genome accession: NC_016589
Putative virulence/resistance : Unknown
Product : DNA-directed RNA polymerase subunit beta
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2752709 - 2756815 bp
Length : 4107 bp
Strand : -
Note : -

DNA sequence : 
ATGCAATATTCCTTCACCGAGAAGAAGCGTATTCGCAAGAGTTTCGCGAAGCGCCCCATCGTTCACCAAGTTCCCTTCTT
GCTGGCGACCCAGCTTGAATCATTCCAGACGTTTCTGCAAGCAGACACGTCTTCTTCGCAGCGCAAGGCAGAAGGCTTGC
AGGCTGCGTTCAGCTCAGTTTTCCCGATTGTCTCGCACAACGGCTTCGCGCGGCTCGAGTTCGTCAGCTACATGCTGTCG
CCGCCCGCGTTCAACATCAAGGAATGTCAGCAGCGTGGCCTGACGTACTGCTCGGCGCTGCGCGCGAAAGTGCGCCTGGT
TCTGCTCGACAAGGAATCGCCCAGCAAGCCGGTCGTCAAGGAAGTGAAGGAACAGGAAGTCTACATGGGCGAAATTCCGC
TCATGACGCCGACGGGTTCGTTCGTCATCAACGGCACCGAGCGCGTGATCGTGTCGCAGCTGCACCGTTCGCCTGGCGTG
TTCTTCGAGCACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCTCGGCGCGCATCATCCCTTACCGTGGTTC
GTGGCTCGATTTCGAGTTCGATCCGAAGGACGTGCTGTACTTCCGCGTTGACCGTCGTCGCAAGATGCCGGTCACGATTC
TGCTGAAAGCCATCGGCATGACGCCGGAGCAGATCCTCGCGAACTTCTTCGTGTTCGACAACTTCGGCCTGATGAGCGAA
GGCGCGCAGATGGAATTCGTTCCGGAGCGTCTGCGCGGTGAAGTCGCGCGCTTCGACATTCAGGATCGCGATGGCAATGT
CATCGTGACGAAGGACAAGCGCATCAACGCGAAGCACATTCGCGATCTCGAAAACGCCAAGACGAAGTTCATCTCGGTGC
CCGAGGAATATCTGCTCGGCCGCGTGCTGGCGAAGAACGTGATCGATCCGGAAACGGGCGAAGTGATCGCGAACGCCAAC
GAGGAAATCACCGAAACGGTTCTCGAAAAGCTGCGCGAGGCGAAGGTCAAGGACATCCAGACGCTGTACACGAACGATCT
GGATCAGGGTCCGTACATCTCGTCGACGCTGCGTATCGACGAAACTGCCGACAAGATGGCCGCGCGCATCGCGATCTACC
GCATGATGCGTCCGGGCGAGCCGCCGACCGAAGAAGCGGTCGAGGCCCTGTTCAACCGTCTGTTCTACAGCGAAGACGCG
TACGACCTGTCGAAGGTCGGCCGTATGAAGTTCAACCGCCGCGTGGGTCGCGATGAAATCATCGGACCGATGACGCTGCA
GGACGACGACATCCTCGCGACCATCAAGATCCTCGTCGAGCTGCGCAACGGCAAGGGCGAAGTGGACGATATCGATCACC
TCGGCAATCGTCGCGTGCGTTGCGTCGGCGAACTCGCGGAGAATCAGTTCCGCGCTGGTCTCGTGCGTGTCGAGCGCGCG
GTGAAGGAACGCCTCGGCCAGGCCGAAAGCGAAAACCTGATGCCGCACGACCTGATCAACTCGAAGCCGATTTCGTCGGC
GATTCGCGAGTTCTTCGGTTCGTCGCAGCTTTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATTACGCACAAGC
GTCGCGTGTCCGCACTGGGCCCGGGCGGTCTGACGCGCGAGCGCGCGGGCTTCGAAGTCCGCGACGTGCATCCGACGCAC
TACGGCCGCGTGTGCCCGATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCGCTGTATGCGCACCT
GAACGAATACGGCTTCCTCGAAACGCCGTACCGAAAGGTCGTGGACAGCAAGGTGACCGACCAGATCGACTATCTGTCGG
CAATCGAAGAAGGCCGCTATGTGATCGCGCAGGCGAACGCGGCAGTGGCCGAAGACGGCACGCTGACCGACGAACTCGTA
TCGTCGCGTGAAGCGGGCGAAACGCTGATGGTCACGCCGGACCGCATCCAGTACATGGACGTGGCGCCGTCGCAGATCGT
CTCGGTGGCTGCATCGCTGATTCCGTTCCTCGAACACGACGACGCGAACCGCGCGTTGATGGGCTCGAACATGCAGCGTC
AGGCCGTGCCTTGCCTGCGTCCGGAAAAGCCGGTCGTCGGTACGGGCATCGAGCGCACGGTTGCGGTCGACTCGGGCACG
ACGGTTCAGGCGCTGCGTGGCGGCGTCGTCGATTACGTCGACGCGGGCCGTATCGTGATTCGCGTGAATGACGACGAAGC
CGTGGCCGGCGATGTCGGCGTGGACATCTACAACCTGATCAAGTACACGCGTTCGAACCAGAACACGAACATCAACCAGC
GTCCGATCGCGAAGGTCGGCGATAAGGTTGCGCGCGGCGACGTGCTGGCTGACGGCGCATCGACCGATCTGGGCGAACTC
GCGCTCGGCCAGAACATGCTGGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCGATCCTGATCTCGGAGAA
GGTCGTTGCGGACGATCGCTACACGTCGATCCACATCGAAGAACTGAATGTCGTTGCGCGCGACACGAAGCTCGGACCGG
AAGAAATCACGCGCGATATCTCGAACCTCGCGGAAGTGCAGCTTGGCCGTCTGGACGAGTCGGGCATCGTGTACATCGGC
GCGGAAGTCGAAGCGGGCGACGTGCTCGTCGGTAAGGTCACGCCGAAGGGCGAAACCCAGCTGACGCCGGAAGAAAAGCT
GCTGCGCGCGATCTTCGGCGAGAAGGCATCGGACGTGAAGGACACGTCGCTGCGCGTGCCGTCGGGCATGAGCGGCACGG
TCATCGACGTGCAAGTGTTCACGCGCGAAGGCATCACGCGTGACAAGCGCGCGCAACAGATCATCGACGATGAACTGAAG
CGTTATCGCCTCGATTTGAACGACCAGTTGCGTATTGTGGAAGGCGACGCGTTCTCGCGTCTCGCACGTATGCTGAACGG
CAAGGTCGCGAACGGCGGTCCGAAGAAGCTCGCGAAGGGCACGGCAATCGACCTCGCGTACCTCGAAGATCTCGACCACT
ACCACTGGTTCGACATCCGCCTCGCGGACGAAGAAGCGGCGGCACAGCTGGAAGCGATCAAGGATTCGATCGAGCAGAAG
CGTCACCAGTTCGACCTCGCGTTCGAAGAGAAGCGCAAGAAGCTCACGCAAGGCGACGAACTGCCGCCGGGCGTGCTGAA
GATGGTCAAGGTGTATCTCGCGGTCAAGCGTCGTCTGCAGCCTGGCGACAAGATGGCGGGCCGTCACGGCAACAAGGGTG
TCGTGTCGAAGATCGTGCCGATCGAAGACATGCCGTACATGGCCGATGGCCGTCCGGCCGACGTCGTGCTGAATCCGCTC
GGCGTGCCGTCGCGGATGAACGTGGGTCAGATTCTCGAAGTGCATCTGGGCTGGGCCGCGAAGGGTCTGGGCTGGCGCAT
CGGCGAAATGCTGCAGCGTCAGACGAAGATCGAAGAACTGCGCATGTTCCTGACGCAGATCTACAACGAGTCCGGCCGCA
AGGAAGAGCTGGACAGCTTCTCCGACGACGAGATCCTCGAACTCGCGAAGAATCTGCGCGAAGGCGTGCCGTTCGCCACG
CCGGTGTTCGACGGTGCGACCGAAGAGGAAATGGGCCGCGCGCTGGATCTGGCGTACCCGGACGATATCGCCACGAACCT
CGGCATGAACCCGTCGAAGAATCAGGTTCAACTGCACGATGGCCGCACGGGCGAACCGTTCGAGCGCAAGGTCACGGTCG
GCTACATGCACTACCTGAAGCTGCACCACTTGGTCGACGACAAGATGCACGCGCGTTCGACCGGCCCGTACTCGCTCGTC
ACGCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGCGGCCAGCGCTTCGGTGAGATGGAAGTGTGGGCGCTGGAAGCGTA
CGGCGCATCGTATGTGCTGCAAGAAATGCTGACGGTCAAGTCGGACGACGTCACCGGCCGGACGAAGGTGTATGAGAACC
TCGTCAAGGGCGATCACGTCATCGACGCGGGCATGCCGGAATCCTTCAACGTGTTGGTGAAGGAAATCCGCTCGCTCGGT
ATTGATATCGATCTGGACCGCAACTAA

Protein sequence : 
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFQTFLQADTSSSQRKAEGLQAAFSSVFPIVSHNGFARLEFVSYMLS
PPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVKEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGV
FFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGMTPEQILANFFVFDNFGLMSE
GAQMEFVPERLRGEVARFDIQDRDGNVIVTKDKRINAKHIRDLENAKTKFISVPEEYLLGRVLAKNVIDPETGEVIANAN
EEITETVLEKLREAKVKDIQTLYTNDLDQGPYISSTLRIDETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDA
YDLSKVGRMKFNRRVGRDEIIGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH
YGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVVDSKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELV
SSREAGETLMVTPDRIQYMDVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIAKVGDKVARGDVLADGASTDLGEL
ALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIG
AEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGITRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFSRLARMLNGKVANGGPKKLAKGTAIDLAYLEDLDHYHWFDIRLADEEAAAQLEAIKDSIEQK
RHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPL
GVPSRMNVGQILEVHLGWAAKGLGWRIGEMLQRQTKIEELRMFLTQIYNESGRKEELDSFSDDEILELAKNLREGVPFAT
PVFDGATEEEMGRALDLAYPDDIATNLGMNPSKNQVQLHDGRTGEPFERKVTVGYMHYLKLHHLVDDKMHARSTGPYSLV
TQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLG
IDIDLDRN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00346 YP_008207811.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR25 Protein 0.0 66
BJAB0868_00350 YP_008211676.1 DNA-directed RNA polymerase, beta subunit/140 kD subunit Not tested AbaR26 Protein 0.0 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP002695.1.gene18.p0 Protein 0.0 82
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_008702.1.4609796. Protein 0.0 77
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_011035.1.6448762. Protein 0.0 75
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002516.2.881699.p Protein 0.0 68
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP000034.1.gene3741. Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP001918.1.gene250.p Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP001138.1.gene4362. Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002695.1.914942.p Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP000647.1.gene4402. Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_010400.5987325.p0 Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_010611.6233925.p0 Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_011595.7060572.p0 Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_010410.6003841.p0 Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_011586.7046027.p0 Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP000675.2.gene392.p Protein 0.0 66
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP004022.1.gene2794. Protein 0.0 65
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_009085.4918494.p0 Protein 0.0 65
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP003583.1.gene2745. Protein 0.0 46
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta CP001581.1.gene3846. Protein 0.0 46
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta AM180355.1.gene120.p Protein 0.0 46
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002758.1120515.p0 Protein 1e-180 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002953.2862188.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_013450.8613267.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_007793.3914836.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_003923.1002608.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_009641.5330265.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002951.3236234.p0 Protein 1e-180 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_010079.5776819.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002952.2860169.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_007622.3792928.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_002745.1123305.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_007795.3920377.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_009632.5315067.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_009487.5169226.p0 Protein 1e-180 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_009782.5559150.p0 Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta AE016830.1.gene3155. Protein 0.0 45
BYI23_A024550 YP_004978270.1 DNA-directed RNA polymerase subunit beta NC_012469.1.7686402. Protein 1e-175 44