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Name : Niako_4932 (Niako_4932) Accession : YP_005010575.1 Strain : Niastella koreensis GR20-10 Genome accession: NC_016609 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 6087375 - 6091178 bp Length : 3804 bp Strand : - Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGTCTTCAACAAAACTGTCAACAAGGGTCAACTTCGGGAAAATTAAAAATCTTGCCGATGCACCTGACTTACTAGAAGT ACAAATTCAATCTTTCAAAGAGTTTTTCCAATTAGAGACCACGCCCGACAAGCGTAATATTGAAGGGTTGTTTAAGGTGT TCAAGGAAAACTTTCCCATTACTGATACACGAAACATATTCGTGTTGGAGTTTTTGGATTATTTCATCGACCCGCCCCGC TACACCATTGAAGAGTGTATGGAGCGCGGATTAACATATGCCGTTCCCCTTAAAGCGAAACTGAGGCTGAGTTGTAATGA CGAAGAGCACGTTGACTTCCAGACCATCGTTCAGGATGTGTTCCTGGGGAACATTCCATACATGACCCCCCGCGGTACCT TCGTGATAAACGGAGCAGAGCGCGTGGTGGTTTCTCAATTACACCGTTCACCTGGTGTATTCTTCGGTCAGTCAATTCAC CCCAACGGTACCAAGATCTATTCTGCCCGCGTAATTCCTTTCAAAGGTGCGTGGATGGAGTTCGCTACCGATATCAACAA CGTAATGTATGCGTACATTGACCGTAAGAAGAAATTCCCGGTTACCACACTGTTGCGTTCTATCGGTTACGAAACTGATA AAGATATCCTGGAGCTGTTCGGTATGGCAGACGAAGTGAAAAGCGACAGAAAATCATTACAGAAATATCTTGGCAAACGC CTCGCTGCCCGCGTATTGAGGACCTGGGTAGAAGATTTCGTAGACGAAGATACCGGTGAGGTTGTGTCTATTGAAAGAAA CGAGGTTGTGCTGGAGCGCGATACCGTGTTGGATGAGGAAGCAATTGACATGATTGCCGATATGGACGCAAAGAGCGTAT TCGTGCAAAAAGAAGATGTTGGCGGTGATTACGCTATCATCTATAACACCCTCAATAAAGATACTTCAAACAGTGAGCTG GAAGCCGTTCAGCACATCTACCGCCAGTTGCGCGGTGCTGATGCGCCGGATGATGAAACAGCCCGCGGTATCATTGATAA ATTGTTCTTCAGCGACAAACGTTACGATTTAGGGGAAGTAGGTCGCTACAAGATCAACCGCAAGCTGTTGCTGAATCAAC CGCTCGATCAAAAGACCTTAACAAAAGAAGATATCATCGAGATCATCAAATACCTGGTTCGTTTAACCAATGGTAAAGCG GAAATCGATGACATCGATCACCTGAGCAACCGTCGTGTACGTACCGTAGGTGAGCAGTTATATGCTCAGTTCGGTGTTGG TTTGGCCCGTATGGCCCGTACCATCCGCGAGCGTATGAACGTACGTGATAATGAGGTGTTCACCCCGGTTGACCTGATCA ACGCCAGAACGTTGTCATCAGTGATCAACTCATTCTTCGGTACTTCTCAGTTGTCACAATTCCTCGATCAAACCAACCCG CTGAGTGAGATCACGCACAAGCGTCGTATCTCCGCACTCGGACCCGGTGGTTTGAGCCGTGAAAGAGCCGGTTTCGAGGT TCGTGACGTACACTACAGCCACTATGGCCGTTTGTGTACCATTGAAACTCCTGAAGGCCCGAACATCGGTTTGATCTCTA CGCTTTGCGTACACGCGAAGATCAACGAAATGGGCTTTATTGAAACGCCTTATCATAAAGTAGACAATGGAAAGGTTGAC CTGAAAAAGCTCACCTTCTTGAGTGCTGAAGAAGAAGATAACGCCAAGATCGCCCAGGCAAGTTCACCGCTCGATGAAAA AGGCCATTTCGTGGAAGAAAAGATCACTTCACGCCAAACCGGTGACTTCCCGATCCTTGATCAAAACGAAGTGGAATTCA TGGACGTAGCGCCAAACCAGATCGTGGGTTTGAGTGCTTCGCTGATCCCCTTCTTGGAACATGATGACGCCAACCGTGCG CTGATGGGATCGAACATGCAACGCCAGGCTGTACCGCTGATCCGTCCTGAAAGCCCCATCGTGGGTACAGGTTTGGAAGC AAAAGCAGCCCGAGACGCCCGTGTACAGATCCTGTCTGAAGGTGAAGGTGTGGTAGAGTACGTTGATGGCAGTGAAATTC ACGTTCGCTACGACCGTACCGAAGCCGACCGTTTGGTGAGCTTTGAAGATGACCTGAAAGTTTACAAACTGACCAAGTTC ATAAAAACAAACCAGGAAACCTGTATCAACCACAAACCTGCAGTTAGAAAAGGACAACGCATGAAAAAAGGCGACTTCCT TACTGAAGGTTATGCGGTACAGGGTGGTGAACTGGCTTTAGGCCGTAACCTGAAAGTGGCGTTCATGCCATGGAAAGGGT ACAACTTCGAGGATGCCATCGTAATCAGCGAAAGAGTAGCCAAGGAAGATCTGTTCACTTCTATTCACATTTCTGAATAT GAACTGGAAGTACGTGATACCAAACTGGGTGAAGAAGAGCTGACACCAGATATTCCAAACGTATCGGAAGAAGCTACCAA AGACCTGGATGAAAATGGTATCATCCGTTTAGGTGCCGCCATCAAAGAAGGCGATATCCTGATCGGTAAGATCACTCCAA AAGGAGAAAGCGATCCTACACCGGAAGAAAAATTGTTACGCGCCATCTTCGGTGATAAAGCCGGTGATGCCAAAGATGCT TCTTTGAAAGCGCCAAACGGGGTAGAAGGTGTTGTGATCGGTAAAAAACTTTTCCAACGCGCCAAAAAAGATAAGAACGC GAAGATCCGTGAGAAGGCTGCCCTGGAAAAGCTGGAAAAAGTGCACGAGAAAAATGAAGAAGACCTGAAAGAAGAATTGT TGAACAAACTGCAAACCCTGTTGAAAGACAAGGCCTCTGCTGGTGTAAACAACAACTTCGGTGAGGTGCAGATCGGTAAA GGCGCCAAATTCAATCCAAAGAACCTGGGTTCTATCGACTATCAGAATGTAAACCCGCTGGGTTGGACTGGTGACGCTTC TATCGATGATGCTATTAATACCTTGTTGCACAACTTCAACATCAAATACAACGAAGAACTGGGTAGATATAAGAGGGAGA AATTCAACATTTCAATCGGGGATGAATTACCTGCCGGTGTGTTGAAACTGGCTAAAGTATATCTGGCTGTTAAGCGTAAG CTGAAAGTAGGTGATAAAATGGCCGGTCGCCACGGTAATAAAGGTATCGTTGCCAAGATCGTGCGTGCTGAAGACATGCC GTTCCTGGAAGATGGTACGCCGGTTGACATTGTGTTGAACCCACTCGGGGTTCCTTCCCGTATGAACCTGGGCCAGATCT ATGAAACTGTATTAGGCTGGGCCGGTTTGAAATTGGGTGTGAAGTTCGCTACACCGATCTTCGATGGTGCTACTACTGAC GAAATTGCTCAAAACATCAATAATGCAGGTTTGCCAAGCTACGGCCACACGCACCTGTATGATGGTGAAACCGGTGACCG TTTCCACCAGAAAGCTACCGTGGGTGTTATTTATATGATTAAACTGCACCACATGGTTGATGATAAGATGCACGCCCGTT CTATCGGACCCTACAGTCTTATCACACAACAGCCGCTGGGTGGTAAAGCTCAGTTTGGTGGTCAGCGTTTTGGTGAAATG GAGGTGTGGGCACTGGAAGCTTACGGTGCTTCAAACATCCTGCAGGAATTGCTTACGCTTAAATCGGATGATATTATCGG CCGTGCAAAAACCTACGAGGCTATTGTTAAGGGTGATAATATTCCAAGAGCCGGTATTCCTGAGTCGTTCAATGTATTGG TGCATGAATTGAGAGGATTGGGTCTTGACCTGAAATTCGAATAG Protein sequence : MSSTKLSTRVNFGKIKNLADAPDLLEVQIQSFKEFFQLETTPDKRNIEGLFKVFKENFPITDTRNIFVLEFLDYFIDPPR YTIEECMERGLTYAVPLKAKLRLSCNDEEHVDFQTIVQDVFLGNIPYMTPRGTFVINGAERVVVSQLHRSPGVFFGQSIH PNGTKIYSARVIPFKGAWMEFATDINNVMYAYIDRKKKFPVTTLLRSIGYETDKDILELFGMADEVKSDRKSLQKYLGKR LAARVLRTWVEDFVDEDTGEVVSIERNEVVLERDTVLDEEAIDMIADMDAKSVFVQKEDVGGDYAIIYNTLNKDTSNSEL EAVQHIYRQLRGADAPDDETARGIIDKLFFSDKRYDLGEVGRYKINRKLLLNQPLDQKTLTKEDIIEIIKYLVRLTNGKA EIDDIDHLSNRRVRTVGEQLYAQFGVGLARMARTIRERMNVRDNEVFTPVDLINARTLSSVINSFFGTSQLSQFLDQTNP LSEITHKRRISALGPGGLSRERAGFEVRDVHYSHYGRLCTIETPEGPNIGLISTLCVHAKINEMGFIETPYHKVDNGKVD LKKLTFLSAEEEDNAKIAQASSPLDEKGHFVEEKITSRQTGDFPILDQNEVEFMDVAPNQIVGLSASLIPFLEHDDANRA LMGSNMQRQAVPLIRPESPIVGTGLEAKAARDARVQILSEGEGVVEYVDGSEIHVRYDRTEADRLVSFEDDLKVYKLTKF IKTNQETCINHKPAVRKGQRMKKGDFLTEGYAVQGGELALGRNLKVAFMPWKGYNFEDAIVISERVAKEDLFTSIHISEY ELEVRDTKLGEEELTPDIPNVSEEATKDLDENGIIRLGAAIKEGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDAKDA SLKAPNGVEGVVIGKKLFQRAKKDKNAKIREKAALEKLEKVHEKNEEDLKEELLNKLQTLLKDKASAGVNNNFGEVQIGK GAKFNPKNLGSIDYQNVNPLGWTGDASIDDAINTLLHNFNIKYNEELGRYKREKFNISIGDELPAGVLKLAKVYLAVKRK LKVGDKMAGRHGNKGIVAKIVRAEDMPFLEDGTPVDIVLNPLGVPSRMNLGQIYETVLGWAGLKLGVKFATPIFDGATTD EIAQNINNAGLPSYGHTHLYDGETGDRFHQKATVGVIYMIKLHHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM EVWALEAYGASNILQELLTLKSDDIIGRAKTYEAIVKGDNIPRAGIPESFNVLVHELRGLGLDLKFE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 45 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 46 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 46 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 46 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 46 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 46 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 45 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 44 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 44 |
| Niako_4932 | YP_005010575.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 44 |
