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Name : rpoB (AZOBR_160007) Accession : YP_005032217.1 Strain : Azospirillum brasilense Sp245 Genome accession: NC_016617 Putative virulence/resistance : Unknown Product : RNA polymerase, beta subunit Function : - COG functional category : - COG ID : - EC number : - Position : 2410747 - 2414871 bp Length : 4125 bp Strand : - Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme DNA sequence : ATGCCCAACCTCATCGAGGTGCAGCGCAGCTCCTACGACCACTTCCTGCAAATGGACGTCCCGCCGGAAAAGCGGGCCAA CCTGGGTCTGCAGGAGGTGTTCCGGTCGGTGTTCCCGATCAAGGACTTCTCCGACCGCGCCGTCCTCGACTTCGTGAAGT ACGAGCTTGAGCAGCCGAAGTATGACGTCGAAGAGTGCCAGCAGCGCGGCATGACCTTCGCCGCCCCGCTGAAGGTGACC CTGCGCCTCTCCGTCTTCGACGTGGAAGAGGACACGGGGCTGCGCTCGATCCGCGACATCAAGGAGCAGGACGTCTACAT GGGCGACATGCCCCTGATGACGGCCAACGGCACCTTCATCATCAACGGCACCGAGCGCGTCATCGTCTCGCAGATGCACC GCAGCCCGGGCGTCTTCTTCGACCATGACAAGGGCAAGACCCACTCGTCGGGCAAGTATCTCTTCGCCGCCCGCGTGATC CCGTACCGCGGCTCCTGGCTGGACTTCGAGTTCGACGCCAAGGACCTCGTCTACGTGCGCATCGACCGCCGCCGCAAGCT GCCGGCCACCACGCTGCTGTTCGCTCTGGACGGCGCGGAGACCGAGGCGCTGCGCGCCGAGCGGAAGGCTCAGAAGAAGG ACCTGCTGCCCTACGAGGCGCAGGGCATGGCGAAGGAAGAAATCCTCAACTTCTTCTACGACACCATCACCTACACCCGC GCGTCGGGCGGCTGGAAGACCCCCTTCAACGCTGACCGCATGAAGGGCGTGAAGGTCGCCTCCGACCTCGTGGACGCGGC CTCCGGCCAAGTCGTCGCCGAGGCCGGCACCAAGATGACGCCGCGCCTGATCAAGAAGCTGGTCGAGGGCGGCCTCGCCG AGCAGCTCGTCTCCACCGAGGAGCTGACCGGCCGCTACCTCGCCGTCGACATCATCAACGAGCGGACCGGCGAAGTCCTG TTCGAAGCCGGTGACGAATTGTCGGCGAGCGATCTCGACAAGCTGGAGAAGGCCGGCGTCGACGAGCTGCCGGTGCTGGC GATCGACCACCTGAACGTCGGCGCCTACATCCGCAACACGATGGCCGCCGACCGCAACGCGTCCCGCGAGGACGCGCTGA TCGACATCTACCGCGTCATGCGTCCGGGCGAGCCGCCGACCCTGGAGTCGGCCGAGGCGCTGTTCGCCGGCCTGTTCTTC GACAGCGAGCGCTACGACCTGTCGGCGGTGGGCCGCGTCAAGATGAACGCGCGCCTGAACTTCCAGACCGACGACAGCGT CCGCGTCCTGCGCAAGCAGGACATCATGTCGATCCTCAAGGTTCTGGTGAACCTGAAGGACGGCCGCGGCGAGATCGACG ACATCGACCATCTCGGCAACCGCCGCGTCCGCTCGGTCGGCGAGCTGATGGAGAACCAGTACCGCGTCGGCCTGCTGCGC ATGGAGCGCGCGATCCGCGAGCGCATGAGCTCGGTCGAGATCGACACGGTCATGCCGCACGACCTGATCAACGCCAAGCC GGCGGCCGCCGCCGTGCGCGAGTTCTTCGGCTCGTCGCAGCTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCCGAGA TCACGCACAAGCGTCGTCTCTCGGCCCTCGGCCCGGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTG CACCCGACGCACTACGGCCGCATCTGCCCGATTGAGACGCCGGAAGGCCCGAACATCGGTCTGATCAACTCGCTGGCGAC CTACGCCCGCGTGAACCAGTACGGCTTCATCGAGAGCCCGTACCGCAAGGTGCGCGACAGCATCGTCACCGACGAGGTGG TCTACCTCTCCGCCATGGAGGAGGGCCGCTACGTCGTCGCCCAGGCGAACGCCGAGCTGGACGCGGACAACCGCTTCGCC GCCGACCTCGTGTCGTGCCGGCAGGGTGGCGAATACCTGATGTTCCGCCCGGAGGCCATCGACCTGATCGACGTGTCGCC GAAGCAGCTCGTCTCCGTCGCCGCGGCGCTGATCCCGTTCCTGGAGAACGACGACGCGAACCGCGCGCTGATGGGCTCGA ACATGCAGCGTCAGGCGGTGCCGCTGGTCAAGGCCGACGCGCCGCTGGTCGGCACGGGCATGGAGGCCACGGTGGCCCGT GACTCCGGCGTGACCATCGTCGCCAAGCGCAAGGGCATCGTCGACCAGATCGACGCGACCCGCATCGTGGTCCGGGCGAC CGACTCGTCCGACGCCACGGCGCCGGGCGTGGACATCTACAACCTGCTGAAGTTCCAGCGTTCCAACCAGAACACCTGCA TCACCCAGCGTCCGCTGGTGAAGGTGGGCGACCGCGTGGCGGCCGGCGACATCATCGCCGACGGCCCCTCGACGGAGCTG GGCGAGCTGGCGCTGGGCCGCAACGTGCTCGTCGCCTTCATGCCGTGGAACGGCTACAACTTCGAGGACTCGATCCTCAT CAACGAGCGCATCGTCAAGGACGACGTCTTCACCTCGATCCACATCGAGGAGTTCGAGGTCATGGCCCGCGACACCAAGC TGGGCCAGGAGGAAATCACCCGCGACATTCCGAACGTCGGTGAGGAAGCCCTCAAGAACCTCGACGAGGCCGGCATCGTC TACATCGGAGCCGAGGTCCGTCCGGGCGACATCCTGGTCGGCAAGGTGACGCCGAAGGGCGAAAGCCCGATGACTCCGGA AGAGAAGCTGCTTCGCGCCATCTTCGGCGAGAAGGCGTCCGACGTCCGCGACACCTCGCTGCGCCTGCCGCCGGGCGTCG CCGGGACGATCGTCGAGGTCCGCGTGTTCAGCCGCCGCGGCGTCGACAAGGACGAGCGCGCCCTGGCGATCGAGCGGGCC GAGATCGAGAAGCTGGCCAAGGATCGCGATGACGAGCGCGCGATCCTGGAGCGCAGCTTCTACACCCGCCTGAAGGAAGT CATCCTCGGCCAGACCGCGCAGTCCGGCCCGAAGGGCATGCGGGCCGGCACGGTCCTGACCGACGCCGAGCTGGCGAACC TGACCAAGGGCCAGTGGCGCCAGATCTCCATCGCCGACGAGCAGGTGATGGAGACGGTGGAGAGCCTGGGCAAGGTCTTC GACGACTCGATCCAGGCGCTGCAGAACCGCTTCGAGAACAAGGTCGAGAAGCTGCAGCGCGGCGACGAGCTGCCGCCGGG CGTGATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGCCACGGCA ACAAGGGTGTGGTTTCCCGCATCCTGCCGCAGGAGGACATGCCGTACCTGGAAGACGGCCAGCCGGTCGATCTGGTGCTG AACCCGCTGGGCGTGCCGTCGCGCATGAACATCGGTCAGATCCTGGAGACCCATCTGGGCTGGGCGTCGGCCGGCCTCGG CAAGCAGATCGGCCGCGCCATCGACCAGTACCGTCTCGCCATGAAGGGCCGCGGCGACGCCGCCCAGACCATGGACGGGC TGCGCATCACGCTGAAGGAAGCCTACGGCCAGAAGGTCTACGACGACCAGATCGCCGACATGACCGAAGGCGAGCTGCTG GAGCTGGGCGGCAACCTGCGCAAGGGCGTTCCCTTCGCCACGCCGGTCTTCGACGGCGCGCGCGAGGAGGACATCTGCCA GCAGCTGGAGAAGGCGGGTCTCGACCGTTCCGGTCAGGTCACCCTGATCGACGGCCGCACCGGCGAGGCCTTCGACCGCA AGGTGACAGTCGGCTACATCTACATGCTGAAGCTGCACCACCTGGTGGACGACAAGATCCACGCGCGCTCGATCGGTCCC TACTCGCTGGTCACCCAGCAGCCGCTCGGCGGTAAGGCCCAGTTCGGCGGACAGCGCTTCGGTGAAATGGAAGTGTGGGC GCTCGAAGCCTACGGCGCCGCCTACACGCTGCAGGAAATGCTCACGGTCAAGTCGGACGACGTGTCCGGCCGCACCAAGG TCTACGAGGCGATCGTCCGCGGCGACGACAACTTCGAGGCGGGCATCCCTGAGTCCTTCAACGTTCTGGTCAAGGAGCTG CGCTCCCTGGGCCTGAACGTCGAGCTGAACCAGCGGTCGTACTGA Protein sequence : MPNLIEVQRSSYDHFLQMDVPPEKRANLGLQEVFRSVFPIKDFSDRAVLDFVKYELEQPKYDVEECQQRGMTFAAPLKVT LRLSVFDVEEDTGLRSIRDIKEQDVYMGDMPLMTANGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLFAARVI PYRGSWLDFEFDAKDLVYVRIDRRRKLPATTLLFALDGAETEALRAERKAQKKDLLPYEAQGMAKEEILNFFYDTITYTR ASGGWKTPFNADRMKGVKVASDLVDAASGQVVAEAGTKMTPRLIKKLVEGGLAEQLVSTEELTGRYLAVDIINERTGEVL FEAGDELSASDLDKLEKAGVDELPVLAIDHLNVGAYIRNTMAADRNASREDALIDIYRVMRPGEPPTLESAEALFAGLFF DSERYDLSAVGRVKMNARLNFQTDDSVRVLRKQDIMSILKVLVNLKDGRGEIDDIDHLGNRRVRSVGELMENQYRVGLLR MERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETPEGPNIGLINSLATYARVNQYGFIESPYRKVRDSIVTDEVVYLSAMEEGRYVVAQANAELDADNRFA ADLVSCRQGGEYLMFRPEAIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEATVAR DSGVTIVAKRKGIVDQIDATRIVVRATDSSDATAPGVDIYNLLKFQRSNQNTCITQRPLVKVGDRVAAGDIIADGPSTEL GELALGRNVLVAFMPWNGYNFEDSILINERIVKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDEAGIV YIGAEVRPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFSRRGVDKDERALAIERA EIEKLAKDRDDERAILERSFYTRLKEVILGQTAQSGPKGMRAGTVLTDAELANLTKGQWRQISIADEQVMETVESLGKVF DDSIQALQNRFENKVEKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRILPQEDMPYLEDGQPVDLVL NPLGVPSRMNIGQILETHLGWASAGLGKQIGRAIDQYRLAMKGRGDAAQTMDGLRITLKEAYGQKVYDDQIADMTEGELL ELGGNLRKGVPFATPVFDGAREEDICQQLEKAGLDRSGQVTLIDGRTGEAFDRKVTVGYIYMLKLHHLVDDKIHARSIGP YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNVLVKEL RSLGLNVELNQRSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 58 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_010611.6233925.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_011595.7060572.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_010410.6003841.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_011586.7046027.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_010400.5987325.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP000675.2.gene392.p | Protein | 0.0 | 58 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP001138.1.gene4362. | Protein | 0.0 | 57 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | CP000647.1.gene4402. | Protein | 0.0 | 57 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | NC_011035.1.6448762. | Protein | 0.0 | 57 |
| rpoB | YP_005032217.1 | RNA polymerase, beta subunit | AE016830.1.gene3155. | Protein | 0.0 | 49 |
