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Name : rpoB (AZOLI_0450) Accession : YP_005038078.1 Strain : Azospirillum lipoferum 4B Genome accession: NC_016622 Putative virulence/resistance : Unknown Product : RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 421887 - 426011 bp Length : 4125 bp Strand : + Note : Evidence 2a : Function of homologous gene experimentally demonstrated in an other organism; Product type e : enzyme DNA sequence : ATGCCCAACCTCATCGAGGTGCAGCGCAGCTCCTACGATCACTTCCTGCAAATGGACGTCGCCCCGGAAAAGCGGGCGAA CCTGGGCCTGCAGGAAGTCTTCAAGTCGGTCTTCCCGATCAAGGACTTCTCCGACCGCGCGGTGCTGGATTTCGTCAAGT ACGAGCTTGAGCAGCCGAAGTACGACGTCGAGGAGTGCCAGCAGCGCGGCATGACCTTCGCCGCCCCGCTGAAGGTAACC CTGCGCCTGTCCGTGTTCGACGTCGAGGAAGATACCGGCCTCCGGTCCATCCGCGACATCAAGGAGCAGGACGTCTACAT GGGCGACATGCCCCTGATGACGGCCAACGGCACCTTCATCATCAACGGCACCGAGCGCGTCATCGTCTCCCAGATGCACC GCAGCCCGGGTGTCTTCTTCGACCATGACAAGGGCAAGACCCACGCGTCGGGCAAGTACCTGTTCGCCGCCCGCGTCATC CCCTATCGCGGTTCCTGGCTCGACTTCGAGTTCGACGCCAAGGATCTCGTCTATGTGCGCATCGACCGCCGCCGCAAGCT GCCGGCCACCACGCTGCTGTTCGCCCTGGACAGCGCGGAGACCGAGGCTCTGCGCACCGAGCGCAAGGCGAACCGCAAGG ACCTGTTGCCTTACGAGGCGCAGGGCATGTCGAAGGAAGAGATCCTCAACTACTTCTACGACACGATCACCTACAGCCGC TCCGCCGGCGGTTGGAAGACCCCGTTCAGCGCCGAGCGCATGAAGGGCGTCAAGCTGGCGTCCGACCTGGTCGATGCCGC CACCGGCGCCATCGTCGCCGAGGCCGGCACCAAGATGACCCCGCGCGTCATCAAGAAGCTGGTCGAAGCCGGCCTGACCG AGCAGCAGGTCTCCACCGAGGAGCTGACCGGCCGCTATCTCGCCGTCGACATCATCAACGAGCGCACGGGCGAAGTCCTG TTCGAAGCCGGTGACGAGCTGTCGGCGAGCGACCTGGAGAAGCTGGAGAAGACCGGCGTCGACGAACTGCCGGTGCTGGC GATCGACCATCTGAACGTCGGCGCCTACATCCGCAACACCATGTCGGCCGACCGCAACGCCAGCCGCGAAGACGCGCTGA TCGACATCTACCGCGTCATGCGTCCGGGCGAGCCGCCGACCCTCGAGTCGGCCGAGGCGCTGTTCTCGGGCCTGTTCTTC GACAGCGAGCGCTACGACCTGTCGGCCGTCGGCCGCGTCAAGATGAACGCGCGCCTGAACTTCCAGACCGACGACCAGAT GCGCGTTCTCCGCAAGGAGGACATCCTGGAGATCCTGAAGGTTCTGGTGAACCTTAAGGACGGCCGCGGCGAAATCGACG ACATCGACCATCTCGGCAACCGCCGCGTGCGCTCCGTCGGCGAGCTGATGGAGAACCAGTACCGCGTCGGCCTGCTGCGC ATGGAACGTGCGATCCGCGAGCGCATGAGCTCGGTCGAGATCGACACGGTGATGCCGCACGACCTGATCAACGCCAAGCC GGCCGCCGCCGCCGTGCGCGAGTTCTTCGGCTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTGTCCGAGA TCACGCACAAGCGTCGTCTCTCAGCTCTCGGCCCGGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAGGTGCGCGACGTG CACCCGACGCACTACGGCCGCATCTGCCCGATTGAGACCTCCGAAGGTCCGAACATCGGTCTGATCAACTCGCTGGCGAC CTATGCCCGCGTGAACCAGTACGGCTTCATCGAGAGCCCCTACCGCAAGGTCATCGACGGCAAGGTCACCAACGAGGTGG TCTATCTGTCGGCGATGGAGGAGGGCCGCTACGTCGTCGCCCAGGCGAATGCCGAGCTGAACCCCGACAACAGCTTCGCC GCCGATCTGGTGTCCTGCCGCCAGGGCGGCGAATACCTGATGTTCCGGCCGGAAGCGATCGACCTGATCGACGTGTCGCC GAAGCAGCTGGTGTCCGTCGCCGCGGCGCTGATCCCGTTCCTGGAGAACGACGACGCCAACCGTGCGCTGATGGGCTCCA ACATGCAGCGTCAGGCGGTGCCGCTGGTGAAGGCCGACGCGCCGCTGGTCGGAACCGGCATGGAGGCGACCGTCGCCCGC GACAGCGGCGTGACCATCGTCGCCAAGCGTTCGGGCATCGTCGACCAGGTCGACGCCACCCGCATCGTCGTGCGCGCCAC CGACAGCTCCGACAGCACGGCGCCGGGCGTCGACATCTACAACCTGCTGAAGTTCCAGCGTTCCAACCAGAACACCTGCA TCACCCAGCGCCCGCTGGTGAAGGTGGGTGACCGGGTGAACGCCGGCGACATCGTGGCCGACGGCCCGTCGACCGACCTG GGCGAGCTGGCGCTCGGCCGGAACGTGCTCGTCGCGTTCATGCCGTGGAACGGCTACAACTTCGAGGACTCGATCCTCAT CAACGAGCGCATCGTCAAGGACGACGTCTTCACCTCGATCCACATCGAGGAATTCGAGGTCATGGCCCGCGACACCAAGC TGGGCCAGGAGGAAATCACCCGCGACATTCCGAACGTGGGTGAAGAAGCTCTGAAGAACCTCGACGAGGCCGGCATCGTC TACATCGGCGCCGAAGTCCGTCCGGGCGACATTCTGGTCGGCAAGGTGACGCCGAAGGGCGAGAGCCCGATGACGCCGGA AGAGAAGCTGCTGCGCGCCATCTTCGGCGAAAAGGCCTCCGACGTCCGCGACACCTCGCTGCGCCTGCCGCCGGGTGTCG TCGGCACCATCGTCGAGGTCCGCGTGTTCAGCCGCCGCGGCGTCGACAAGGACGAGCGCGCGCTCGCCATCGAACGCGCC GAGATCGAGAAGCTGGCCAAGGACCGCGACGACGAGCGCGGCATCCTGGAGCGCAGCTTCTACACCCGCCTGAAGGAAGT GCTGCTCGGCCAGACCGCGCAGTCCGGCCCGAAGGGCATGAAGGGCGGCACCGTCCTGACCGAGGAGGTGCTGGGCGGCC TGTCGAAGGGCCTGTGGCGCCAGATCGCCATCGCCGACGAGCAGGTGATGGAGACGGTCGAGAACCTGGGCAAGGTGTTC GACGACTCGATCAAGGCCCTGCAGGACCGCTTCGAGAACAAGGTCGACAAGCTGCAGCGCGGTGACGAGCTGCCGCCGGG CGTCATGAAGATGGTCAAGGTTTTCGTCGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCA ACAAGGGTGTCGTCTCGCGCATCATCCCGCAGGAGGACATGCCCTATCTGGAGGACGGCACCCCGGTCGATCTGGTGCTG AACCCGCTGGGCGTGCCGTCGCGCATGAATGTCGGTCAGATCCTGGAAACCCACCTTGGTTGGGCGGCTTCGGGTCTCGG CCGGCAGATCGGACGCGCGGTCGACCAGTACCGTCTGGCGATCCGTCAGAAGGCCGAAGGTGCTCCTCAGCTGGAGGCCC TGCGCAGCACGCTGAAGTCGGCGTATGGCGAGGTGACCTACAACGAGGACATCGCCGACATGAACGACGCCGAGCTGTTG GAGCTGGGCGGCAACCTGCGCAAGGGCGTTCCCTTCGCGACGCCGGTCTTCGACGGCGCTCGCGAGGAGGACATCTGCGT CCATCTGGAACGGGCCGGCTTCGACCGCTCGGGCCAGTCGACGCTGATCGACGGCCGTACCGGCGAGACTTTCGACCGCA AGGTGACCGTCGGCTACATCTACATGCTGAAGCTGCACCACCTGGTGGACGACAAGATCCACGCCCGGTCGATCGGCCCC TACTCGCTGGTCACGCAGCAGCCGCTGGGCGGCAAGGCCCAGTTCGGCGGTCAGCGCTTCGGTGAGATGGAGGGCTGGGC GCTCGAAGCCTACGGCGCCGCCTACACGCTGCAGGAAATGCTGACGGTGAAGTCGGACGACGTGTCCGGCCGCACCAAGG TCTACGAGGCCATCGTCCGCGGCGACGACAACTTCGAGGCCGGCATTCCGGAGTCGTTCAACGTGCTGGTCAAGGAGCTG CGCTCGCTCGGCCTGAACGTCGAACTGAACCAGCGGTCCTACTGA Protein sequence : MPNLIEVQRSSYDHFLQMDVAPEKRANLGLQEVFKSVFPIKDFSDRAVLDFVKYELEQPKYDVEECQQRGMTFAAPLKVT LRLSVFDVEEDTGLRSIRDIKEQDVYMGDMPLMTANGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHASGKYLFAARVI PYRGSWLDFEFDAKDLVYVRIDRRRKLPATTLLFALDSAETEALRTERKANRKDLLPYEAQGMSKEEILNYFYDTITYSR SAGGWKTPFSAERMKGVKLASDLVDAATGAIVAEAGTKMTPRVIKKLVEAGLTEQQVSTEELTGRYLAVDIINERTGEVL FEAGDELSASDLEKLEKTGVDELPVLAIDHLNVGAYIRNTMSADRNASREDALIDIYRVMRPGEPPTLESAEALFSGLFF DSERYDLSAVGRVKMNARLNFQTDDQMRVLRKEDILEILKVLVNLKDGRGEIDDIDHLGNRRVRSVGELMENQYRVGLLR MERAIRERMSSVEIDTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDV HPTHYGRICPIETSEGPNIGLINSLATYARVNQYGFIESPYRKVIDGKVTNEVVYLSAMEEGRYVVAQANAELNPDNSFA ADLVSCRQGGEYLMFRPEAIDLIDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKADAPLVGTGMEATVAR DSGVTIVAKRSGIVDQVDATRIVVRATDSSDSTAPGVDIYNLLKFQRSNQNTCITQRPLVKVGDRVNAGDIVADGPSTDL GELALGRNVLVAFMPWNGYNFEDSILINERIVKDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNLDEAGIV YIGAEVRPGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVVGTIVEVRVFSRRGVDKDERALAIERA EIEKLAKDRDDERGILERSFYTRLKEVLLGQTAQSGPKGMKGGTVLTEEVLGGLSKGLWRQIAIADEQVMETVENLGKVF DDSIKALQDRFENKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVVSRIIPQEDMPYLEDGTPVDLVL NPLGVPSRMNVGQILETHLGWAASGLGRQIGRAVDQYRLAIRQKAEGAPQLEALRSTLKSAYGEVTYNEDIADMNDAELL ELGGNLRKGVPFATPVFDGAREEDICVHLERAGFDRSGQSTLIDGRTGETFDRKVTVGYIYMLKLHHLVDDKIHARSIGP YSLVTQQPLGGKAQFGGQRFGEMEGWALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVRGDDNFEAGIPESFNVLVKEL RSLGLNVELNQRSY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 58 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 58 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 60 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 59 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 59 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 58 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 57 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 57 |
| rpoB | YP_005038078.1 | RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 57 |
