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Name : Desaf_0222 (Desaf_0222) Accession : YP_005050239.1 Strain : Desulfovibrio africanus Walvis Bay Genome accession: NC_016629 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 242490 - 246596 bp Length : 4107 bp Strand : - Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: dvu:DVU2928 DNA-directed RNA polymerase subunit beta; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, d DNA sequence : ATGGGCCAACTTGCCAAACAGTTCGGGAAAATAAGCTACGCGTTATCCATACCACATTTGCTGAACTTGCAGATTGATTC TTACATGCAGTTTCTGCAGATGGATGTCCCGCCGGCAAGCCGGGAGGACTACGGCCTGGAGGGCGTCTTCCGCTCGGTGT TCCCCATCGAGGACTTTAACAAGACCGCCAGCCTCGATTACGTAAGCTATGAGATCGGCGAACCCAAGTTCGATCAGGTC GAGTGCATCTCCAAGGGCCTGACCTACGAAGCGCCCATACGCATCAAGGTCCGCCTGGTGGTCTATGACGTGGACGAGGA GTCCGGCAACCGGACCATCCGCGACATCAAGGAACAGGATATTTATTTCGGCACAATCCCGTTGATGACCGAGAAGGGCA CCTTCATCATCAATGGAACCGAGCGTGTCATCGTCAACCAGCTCCAGCGGTCGCCCGGCATCATCTTCGAGCACGATTCC GGCAAGACACACTCCAGCAAGCGCGTGCTGTACTCCTGCCGTGTCATCCCCATGCGCGGCAGTTGGCTGGATTTCGATTA CGACCACAAGGACATCCTGTACGTGCGCATCGACCGTCGCCGGAAGATGCCCGCGACCATACTGTTCAAGGCCATGGGCC TTACCAAGCAGGATATCCTGGACTACTTCTACGAGCGCGAGACCTACCGCCTGGACGGCGAGCGGGTATTCTTGCAATTC GATCCCAAATCCTACCGCAAGGACAACGCCTTTGCCGACATAGTGGACGCAAAGGGCGAGGTCATTGCCAAGGCTGGCAA GCCCATCACCAAGCGCCATTGGCGCCTGATAGGCGAGGCCGGGGTCAAGGAATTCGAGATCGATCCCAACTTGCTGTTCG GCCTTTTCCTGGCCACGGATATCGTGGATACCGAGACTGGTGAGGTCATCGGCGAGGCCGGCGAGGAAATTCATCTCGAT ATGCTTGAGAACCTGCGCCGCTCGTCCCTGAGCACCTTCCAGGCTCTGTACACCCGCGGCGCGGATGTCTCTTCGTCCCT GCGCGACACGCTCATGCTGGACAAGACCGACAACCTTGAGCAGGCTCAGGTTGAGATCTATCGTCGCCTTCGCCCCAGTT CTCCGCCGACCCCCGAGATCGCGGCCAGCTTCTTCGAGAATCTGTTCCGCAACGCGGACTACTATGATCTGTCTCCCGTG GGCCGCTACAAGCTCAATGCACGTCTGAGCCTGGACAGGCCTCTGGACGAGCGTACCCTGTCCAACGAGGATATCCTGAG CGCCATCAAGCAGCTCGCCTTCCTCAAGGACACGCATGGCCCGGCCGACGATATCGACCACCTGGGCAACCGTCGCGTCA GGCCCGTTGGCGAGCTGGTGGAAAACCAGTACCGCATCGGTTTGGTGCGCATGGAGCGGGCAATCAAGGAGCGCATGAGC CTGCAAGAGGTCGCCACGCTCATGCCGCACGACCTTATCAATCCCAAGCCCGTGGCGGCCGTGCTCAAGGAGTTCTTCGG CACCTCGCAGCTGTCCCAGTTCATGGATCAGACCAACCCGCTGTCCGAGGTGACCCACAAGCGCAGGCTTTCGGCTCTCG GACCCGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAAGTGCGCGACGTGCACACCTCGCACTACGGACGCATTTGCCCC ATCGAGACGCCGGAAGGACCGAACATCGGTCTTATCGTCTCGCTGACCACACTCTCTCGGGTCAATGATTACGGTTTCAT CGAGACGCCTTACCGCGTTATCCGGAACGCCCAGGTCACGGACGAGATCCATTATCTGGATGCCTCCCGCGAGGCCGATC ATGTCATTGCTCAGGCCAACGCGCCGCTGGACGAGAGCCGCTCTTTCGCGGAACCGCTGGTTACTGCGCGTATCAAGGGT GACGTGTTCATGGCCCCGCGTGAAGACATCACGCTCATGGACATCTCGCCTGGCCAGATCGTGTCCATCTCCGCTGCGTT GATTCCTTTCCTGGAGCACGACGACGCCAACCGCGCGCTCATGGGCTCCAACATGCAGCGTCAGGCCGTGCCGCTCATCA GCACCGAAAAGCCGCTGGTCGGCACGGGCATGGAAGGCACCGTGGCCCGCGACTCAGGCGCCTGCCTGCTGGCCGAGCAC GATGGCGTCGTGTCCTATGCCGATGCCGACCGCGTGGTCGTGGTCTATGACGGAGAGGTCTTCCCCGAATCCGGTGGCGT GCGCTCCTACGAGTTGCAGAAGTATCATAAGTCCAACCAGAACTCGTCCTTCGGCCAGAAGCCGCGGGTCCATCCCGGCC AAGTGGTCAAGAAGGGCGCAGTGCTCGCTGACGGACCCGGCATCCAGGACGGCGACTTGGCGTTGGGCAAAAACCTGCTC GTGGCCTTCATGCCATGGTGCGGTTACAACTACGAGGACTCCATCCTGATCTCCGAGCGTGTGGTCAAGGAGGATGTGTT CACCTCCGTGCACATCGAGGAGTTCGAGCTGGTAGCCCGAGATACCAAGCTGGGACCTGAAGAGGTCACTCGCGACATTC CCAACGTCGGCGAGGAGATGCTCAGAAACCTCGACGAGTCGGGCATCATCCGCATCGGCGCCAAGATCGCGCCCGATGAT ATCCTGGTGGGCAAGATCACACCCAAGGGTGAGACGCAGCTGACCCCGGAAGAGAAGCTCTTGCGCGCCATCTTCGGCGA CAAGGCCCGCGACGTGAAGAACACTTCCCTCAAGGTTCCGCCTGGAATCGAGGGCACGATCATCGACGTTAAGGTTTTCA ACCGCCGCTCCAGCGACAAGGATGAGCGCACCAAGCTCATCGAGGATTACGAGCTGCATAAGCTCGACCGCATGGAGACT CAGCATATTCAGGGCCTCAACGAAGCCACGATCCGGCGTATATGGGGCGTGGCGGAAAATAATCGCGTTAACCAGACCAT CATGGGCAAGAAGAAGGGCGAAGTGCTCCTGGAGGAGAACAAGTCCCTGACCATGGAAGTCCTGGAGCAGTTGCCGCTCA AGAAGCTGGCCGGCATGTTCGTCAGCCGCGACACCAACGAGTCCGTGAAGCAGATCCTTGACGACTACGAGCGTCAGGTG CGCTTCATTCGCAATGTCTACGAGCGCAAGAAGACCAAGGTCACCGAGGGTGACGATCTGCCTCCGGGCGTGATCAAGAT GGTCAAGGTTTACATCGCCGTTAAGCGTAAGTTGAGCGTGGGCGACAAGATGGCCGGCCGTCACGGTAACAAGGGTGTTG TTTCCAACATCCTTCCCGCGGAGGATATGCCCTTCTTTGCCGACGGCACCCCCATGGACATCGTGCTCAACCCGCTTGGC GTGCCTTCGCGCATGAACATCGGCCAGATCATGGAAACGCACCTTGGCTGGGCCGCCAAGGAACTCGGCAAGCAGCTTGC GGAGTTGGTTGATTCCGGCGCGGCCGACGAGGTTCTGCGTCAACAGGCCAAGGAGATCTTCACAGACATGGGCGAGCTTA TCGACGCCATGGACTCCGAAGAGCTCAAGGCCAGCCTACAAGAGATTCGCAACGGCTTCGTATGCAAGACACCGGTCTTC GATGGAGCCAGCGAGGATGACATATGGGGCCTGCTCAAGAAAGCCGGCCTGCCCGATGACGGAAAGAGCGTGCTCTTCGA CGGCCGCACCGGTGATATGCTGCACAACAGGGTTACCGTGGGCGTCATGTACATGCTCAAGCTGCACCACTTGGTGGATG AGAAGATTCACGCCCGCTCCACGGGCCCATACTCTCTGGTGACGCAGCAGCCCCTTGGCGGCAAGGCCCAGTTCGGCGGC CAGCGGCTTGGCGAAATGGAAGTCTGGGCTCTGGAGGCTTACGGCGCGGCCAACCTCCTGCAGGAATTCCTGACAGTCAA GTCCGACGATGTCACCGGGCGCGTCAAGATGTACGAGAAGATCGTCAAGGGAGAGAACTTCCTGGAATCGGGCCTGCCCG AGTCCTTCAACGTCCTGGTCAAGGAACTCATGTCTCTGGGCCTCGACGTGACGCTCATCCCCGAGGAGCGCAAAAGAGTC GGCAAGAACCGGGCTCCTGAACGGTAG Protein sequence : MGQLAKQFGKISYALSIPHLLNLQIDSYMQFLQMDVPPASREDYGLEGVFRSVFPIEDFNKTASLDYVSYEIGEPKFDQV ECISKGLTYEAPIRIKVRLVVYDVDEESGNRTIRDIKEQDIYFGTIPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDS GKTHSSKRVLYSCRVIPMRGSWLDFDYDHKDILYVRIDRRRKMPATILFKAMGLTKQDILDYFYERETYRLDGERVFLQF DPKSYRKDNAFADIVDAKGEVIAKAGKPITKRHWRLIGEAGVKEFEIDPNLLFGLFLATDIVDTETGEVIGEAGEEIHLD MLENLRRSSLSTFQALYTRGADVSSSLRDTLMLDKTDNLEQAQVEIYRRLRPSSPPTPEIAASFFENLFRNADYYDLSPV GRYKLNARLSLDRPLDERTLSNEDILSAIKQLAFLKDTHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS LQEVATLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHTSHYGRICP IETPEGPNIGLIVSLTTLSRVNDYGFIETPYRVIRNAQVTDEIHYLDASREADHVIAQANAPLDESRSFAEPLVTARIKG DVFMAPREDITLMDISPGQIVSISAALIPFLEHDDANRALMGSNMQRQAVPLISTEKPLVGTGMEGTVARDSGACLLAEH DGVVSYADADRVVVVYDGEVFPESGGVRSYELQKYHKSNQNSSFGQKPRVHPGQVVKKGAVLADGPGIQDGDLALGKNLL VAFMPWCGYNYEDSILISERVVKEDVFTSVHIEEFELVARDTKLGPEEVTRDIPNVGEEMLRNLDESGIIRIGAKIAPDD ILVGKITPKGETQLTPEEKLLRAIFGDKARDVKNTSLKVPPGIEGTIIDVKVFNRRSSDKDERTKLIEDYELHKLDRMET QHIQGLNEATIRRIWGVAENNRVNQTIMGKKKGEVLLEENKSLTMEVLEQLPLKKLAGMFVSRDTNESVKQILDDYERQV RFIRNVYERKKTKVTEGDDLPPGVIKMVKVYIAVKRKLSVGDKMAGRHGNKGVVSNILPAEDMPFFADGTPMDIVLNPLG VPSRMNIGQIMETHLGWAAKELGKQLAELVDSGAADEVLRQQAKEIFTDMGELIDAMDSEELKASLQEIRNGFVCKTPVF DGASEDDIWGLLKKAGLPDDGKSVLFDGRTGDMLHNRVTVGVMYMLKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQFGG QRLGEMEVWALEAYGAANLLQEFLTVKSDDVTGRVKMYEKIVKGENFLESGLPESFNVLVKELMSLGLDVTLIPEERKRV GKNRAPER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 55 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 53 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 46 |
| Desaf_0222 | YP_005050239.1 | DNA-directed RNA polymerase subunit beta | NC_002951.3236234.p0 | Protein | 0.0 | 45 |
