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Name : rpoB (SCc_722) Accession : YP_005060840.1 Strain : Serratia symbiotica Cinara cedri Genome accession: NC_016632 Putative virulence/resistance : Unknown Product : RNA polymerase, b subunit Function : - COG functional category : - COG ID : - EC number : - Position : 1646401 - 1650462 bp Length : 4062 bp Strand : - Note : - DNA sequence : GTGGTTCGACTTTCCAGCGAGCTGAGGAATCCTATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGG TAAGCGTCCACAAGTTCTGGACATACCCTATCTCCTTTCTATCCAGCTTGATTCGTTCCAGAAATTTATAGATCAAGATC CAGAGGGGCGGTACGGCTTAGAAGCTGCCTTTCGTTCTGTTTTTCCTATTCAAAGTTATAGTGGCAATGCGGAGCTGCAA TATGTTAGCTATCGTCTTGGTGATCCGGTGTTTGATGTTAAAGAATGCCAGATTCGTGGCATAACGTTTTCTGCGCCTCT ACGTGTAAAACTCCGTTTAGTAATTTATGAGCGTGAAGCTCCAGAAGGAACAGTTAAGGATATAAAAGAGCAAGTAGTTT ATATGGGTGAAATACCGATTATGACTGAAAATGGTACCTTTGTGATTAATGGTACTGAGCGAGTGATTGTCTCTCAGTTG CATCGTAGTCCTGGTGTATTTTTTGATAGTGATAAGGGCAAAACTCACTCATCCGGTAAAGTATTGTATAATGCACGTAT TATTCCTTACCGTGGTTCATGGTTAGATTTTGAGTTTGATCCAAAAGATCACTTATTTGTGCGTATCGATCGTCGCCGCA AGTTACCAGCAACGATTATTTTGCGTGCGTTACATTACACCACAGAACAGATACTCGACTTGTTCTTTGATGCTATTACT TTTGAACTGCATGATAATAAGTTACAGATGGAGTTAGTGCCAGAGCGTTTACGTGGTGAAACTGCTGCTTTTGATCTTGA GGCTAATGGTAAAATTTACGTAGAGAAAGGTCGTCGCATTACTGCTCGACATATTCGTCAGCTTGAAAAAGATAAAATTT ATAGTATTCGAGTACCGGTTGAATACATCATAGGAAAGGTAGTTTCACAGGATTATATTGACACCAATACCGGTGAACTA ATCTGTGCTGCTAATACGGAGTTATCATTAGATTTGTTAACTAAATTAAATCAAGCTGGATATAAATCTATCTCAACCTT ATTCACTAATGACTTAGATCATGGCGCTTATATTTCTGAGACTCTACGCATTGATCCTAGTGTTGATCGTTTAAGCGCAT TAGTAGAAATTTACCGCATGATGCGCCCTGGTGAGCCTCCAACACGTGACGCAGCCGAAGGTCTGTTTGAAAATATGTTC TTTTCTGAAGAACGTTATGATTTATCTGCGGTTGGTCGTATGAAGTTTAATCGCTCCTTACTTCGTAAGAATATAGAAGG TTTGGGTATTTTGAGTAAAAATGACATCATTGATGTGATTAAGAAGCTTATAGATATCCGTAATGGTAAAGGTGAAGTAG ATGATATTGACCACTTAGGTAACCGTCGTATTCGTTCTGTTGGTGAAATGGCTGAGAATCAATTTCGTGTTGGTCTTGTA CGTGTTGAGCGCGCAGTGAAGGAGCGTCTATCTTTGGGGGACCTTGATACCCTTATGCCTCAAGATATGATTAATGCTAA GCCGATTTCAGCGGCTGTAAAAGAGTTTTTTGGGTCCAGCCAGTTATCTCAATTTATGGATCAAAATAATCCATTATCTG AGATTACGCATAAGCGCCGTATCTCAGCATTAGGTCCAGGAGGCCTAACTCGCGAACGTGCGGGGTTTGAAGTGCGAGAT GTTCATCCGACTCACTATGGTCGTGTATGTCCTATTGAAACACCAGAAGGACCAAATATAGGTTTAATTAACTCATTGTC TGTATATGCACAAACTAATGAGTATGGTTTCTTAGAGACTCCTTATCGACGCGTACGTGATCGCTTGGTAACAGATGAAA TTAATTACCTGTCTGCTATTGAAGAGGGTAATTTTGTTATTGCTCAAGCAAACTCCAATCTAGATGAGAATGGTCGCTTT GTAGAAGATCTGATTACTTGTCGTAGCAAGGGTGAATCAAGCCTGTTTAGTTGTGATCAAGTCGACTATATGGACGTATC TACTCAACAAGTTGTATCTGTTGGAGCTTCACTTATTCCCTTTCTTGAGCATGATGATGCTAATCGCGCATTAATGGGTG CAAATATGCAGCGTCAGGCGGTACCAACTTTACGAGCAGATAAGCCACTAGTTGGTACCGGTATGGAGCGCGCTGTAGCA GTTGATTCTGGTGTTACTGTTGTAGCTAAACGTGGTGGTATAATTCAGTATGTAGATGCGTCCCGGATAATTATTAAAGT TAATGAAAACGAGATGCACCCCGGAGAAGCGGGTATTGATATTTATAATCTAACCAAATACACGCGTTCTAATCAGAATA CTTGTATTAACCAGATGCCGTGCGTGAATTTGGATGAGCCAATTGAGCGTGGTGATGTGTTAGCAGACGGCCCATCTACA GATCTTGGCGAATTAGCTTTGGGTCAAAATATGCGCGTTGCATTTATGCCATGGAATGGTTACAACTTCGAAGATTCTAT TTTAGTCTCTGAGCGTGTAGTACAAGAGGATCGTTTTACCACCATCCATATTCAGGAGCTAGCATGTATATCTCGTGATA CAAAATTAGGGCCTGAAGAAATTACTGCCGATATTCCTAACGTAGGTGAAGCTGCGCTCTCTAAGTTAGATGAATCTGGA ATTGTTTATATCGGCGCTGAAGTAACCGGTGGTGATATTCTAGTGGGGAAAGTAACGCCAAAGGGTGAAACTCAATTAAC TCCTGAAGAGAAGTTACTGCGTGCAATTTTTGGGGAAAAAGCCTCTGATGTTAAAGACTCTTCACTACGTGTCCCTAATG GTGTCTCAGGTACTATCATAGATGTACAAGTTTTTACTCGTGATGGTGTGGAGAAAGATAAACGAGCGTTAGAAATTGAA GAGATGCAGCTGAAGCAAGCGAAGAAAGATCTTACCGAAGAATTACAAATATTGGAAGCAGGATTATTTACTCGTATTCA CGCCGTATTAGTAGCCGGGGGAATTAATGTTGATAAATTAAGTACTTTACCACGTAAGCTTTGGTTAACAATCAGCTTAA GCGAGGAAAAGAGGCAAAATCAACTAGAGCAATTAGTAGGTCAATATGATGAACTGAAATCAGATTTCGAGAAAAAGATC GAGGTTAAGCGTCGCAAAATTACTCAGGGTGATGATTTAGCGCCTGGCGTGTTAAAGATTATTAAAGTTTATTTAGCAGT TAAACGTCAGATTCAGCCAGGTGATAAGATGGCGGGTCGTCATGGTAATAAAGGTGTGATATCGAAGATTAACCCTATTG AGGATATGCCTTATGATGAAAACGGCACTCCTGTAGACATCGTTCTCAATCCATTAGGCGTACCATCACGTATGAATATT GGCCAAATCTTGGAAACACACCTAGGCATGGCTGCAAAAGGTATTGGTGAAAAGATCAATCAAATGCTTCAACAGCAACA AGAGGTTATTAAATTACGTGAGTTTATTCAGAAGGCCTATGATCTTGGCGATGATATTTGTCAAAAAGTGAACTTAAATG ATTTTACTGACGATGAAGTATTGCGTCTGGCGGAGAACTTAAAATACGGTATGCCAATTGCAACTCCAGTGTTTGATGGC GCAAAAGAGACAGAAATAAAACAACTGTTAGAAATAAGTGGGATCCCAACATCAGGTCAGATTACATTATACGACGGCTG TACTGGCGAGCAATTTGAGCGCCAGGTGACTGTTGGTTATATGTATATGTTAAAATTAAATCATTTAGTTGATGATAAAA TGCATGCTCGTTCAACTGACTCTTATAGCTTAGTGACTCAGCAGCCGCTAGGTGGTAAAGCGCAGTTTGGTGGCCAACGT TTTGGTGAAATGGAAGTATGGGCACTAGAAGCTTACGGTGCAGCTTATACTCTACAAGAGATGCTTACTGTTAAGTCAGA TGATATTAATGGCCGCACTAAGATGTATAAAAATATTGTTGATGGCGATCATCGTATGGAACCAGGTATGCCGGAATCTT TTAATGTATTGTTAAAGGAAATTCGCTCGCTTGGTATTAATATTGAACTCGAAGATGAGTAA Protein sequence : MVRLSSELRNPMVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIDQDPEGRYGLEAAFRSVFPIQSYSGNAELQ YVSYRLGDPVFDVKECQIRGITFSAPLRVKLRLVIYEREAPEGTVKDIKEQVVYMGEIPIMTENGTFVINGTERVIVSQL HRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDHLFVRIDRRRKLPATIILRALHYTTEQILDLFFDAIT FELHDNKLQMELVPERLRGETAAFDLEANGKIYVEKGRRITARHIRQLEKDKIYSIRVPVEYIIGKVVSQDYIDTNTGEL ICAANTELSLDLLTKLNQAGYKSISTLFTNDLDHGAYISETLRIDPSVDRLSALVEIYRMMRPGEPPTRDAAEGLFENMF FSEERYDLSAVGRMKFNRSLLRKNIEGLGILSKNDIIDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLV RVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRD VHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDRLVTDEINYLSAIEEGNFVIAQANSNLDENGRF VEDLITCRSKGESSLFSCDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVA VDSGVTVVAKRGGIIQYVDASRIIIKVNENEMHPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLDEPIERGDVLADGPST DLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACISRDTKLGPEEITADIPNVGEAALSKLDESG IVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIE EMQLKQAKKDLTEELQILEAGLFTRIHAVLVAGGINVDKLSTLPRKLWLTISLSEEKRQNQLEQLVGQYDELKSDFEKKI EVKRRKITQGDDLAPGVLKIIKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNI GQILETHLGMAAKGIGEKINQMLQQQQEVIKLREFIQKAYDLGDDICQKVNLNDFTDDEVLRLAENLKYGMPIATPVFDG AKETEIKQLLEISGIPTSGQITLYDGCTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTDSYSLVTQQPLGGKAQFGGQR FGEMEVWALEAYGAAYTLQEMLTVKSDDINGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 69 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP001918.1.gene250.p | Protein | 0.0 | 91 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_002695.1.914942.p | Protein | 0.0 | 91 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP000647.1.gene4402. | Protein | 0.0 | 91 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP000034.1.gene3741. | Protein | 0.0 | 91 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP001138.1.gene4362. | Protein | 0.0 | 91 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP004022.1.gene2794. | Protein | 0.0 | 88 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_009085.4918494.p0 | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_010410.6003841.p0 | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_011586.7046027.p0 | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_010400.5987325.p0 | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_010611.6233925.p0 | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_011595.7060572.p0 | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | NC_011035.1.6448762. | Protein | 0.0 | 63 |
| rpoB | YP_005060840.1 | RNA polymerase, b subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 63 |
