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Name : SpiGrapes_2128 (SpiGrapes_2128) Accession : YP_005062914.1 Strain : Sphaerochaeta pleomorpha Grapes Genome accession: NC_016633 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 2333367 - 2336885 bp Length : 3519 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGTTGCCAAAGGCAAATCCATAACACGCACGTACATCGGTTCTGATTTCCAAGAAGTCTGTGAACTGCCCAACCTCAT CGGGATCCAGCTTGATTCCTATGAGAGATTCCTACAACTTGAACGTTTCAAGAAGAATCTTGAACCCGATGCTTCGTTTG GCTTGGAGGAAGTGTTCCAGTCAACGTTTCCAATTGATAGTCCTAATGGTGAGATGCGTCTTGCATACAAAGGCTATACG ATTGACTTTAACAATATCAAGTTTTCGGAAACCGAATGTAAAAAGAAGGGCCGCTCCTACAGTGTGCCAATCAAGGTTAC CATTAGTCTCGAATTCTCTAATGGAGAAATGAGGGAAAAGGAAATCTTCTTTGGGGATATTCCCCTGATGACCGACCGTG GAACCTTTATCATCAATGGCGCAGAACGCGTTGTTGTCAGCCAGATTCACCGTTCGCCCGGTGTTATTTTCTCAAACGAA AAGGGTGTGTATTCTTCCAGGATCATTCCTTATCGTGGTTCTTGGCTGGAATTTGAAATTGATGATAAAAAACATCTTAT TTTCACAAAAATCGATAGAAAGAAACGAATCCTTGGAACTTTGTTCCTTCGTGCTATCGGTCTTGATTCCCGTGAAAAGA TCGTAGAACATTTCTATAAGAGTGAAACGATTGAACTCGCTGATGACAGCGATTTGAAGTCGAGTCTCGAAAACAGATAT ATCTACAAGGACGTCTATGCTGTTGTTGAGGGGGAGAATAAAAAAGTACTCCGCTCCGGTGACAAGCTTCATGCCCATGA AATCGATGAGCTTCTTGGTTTGAAAATCACTTCTCTGGAACTTATCAATATGAAGGGTGAATCTTCCCTGCATAGCGATA TTATCCTGAACTGTTTTGAAATCGAGGATGCAAAATATACCCGTGAGGGTTTTGATGAACCGACTAAAGAAGATGTGCTC AGTCCCATCTTCAGCGTCCTCATGCCCGGTGAGATGATTGCAATTGAACGCGCAGAGAGAGATCTGCCTGATATGTTCTT CTCAAGCCGTCGCTATGACCTCGGTTCTGTTGGTCGTTATAAATTCAATAAGAAGTTTGGTTCAGGGACCGAAGAGGAAG AAGAGAATGCTTCAACCGATTTGACCGTCCTGACCCCAAGCGACATAGTCAATACTATGGGTTTCCTTATCAAGGTATTC ATCCGTGAGGAGAATGTCGATGATATCGACCATTTGGGTAACCGACGTGTTCGTTCTGTCGGGGAACTGTTGCAGAATGC ACTTAAGAGTGCCTTTGCCAGAATGGAACGTATTGCCAAGGAAAGGATGAATCTCGAGACTGGTAGCGTAAAACCCCAGG ATTTGATTTCCATCAAACCGATTGTAGCCGCTGTGAAGGAATTTTTTGGCAGTAGCCAACTTTCCCAGTTCATGGACCAG GTCAATCCTTTGGCTGAACTCACCCATAAAAGACGTTTGAATGCTTTGGGACCTGGTGGTCTTTCCCGAGACCGTGCCGG CTTTGAAGTGCGTGACGTTCACTATACCCACTATGGACGTATTTGCCCTATCGAGACCCCTGAAGGACCGAACATCGGTT TGATCGTGTCTTTGGCAAACTACACCCGGGTAAACCAGCATGGATTTCTTGAGACTCCTTACCGTAAAGTAATAAACGGC GTAGTTTCAAAACAGTACAGGTTCCTTGATGCCAACGATGAAGAGAAATATTTTATCGCACAGGCTTCGGCCAGGCTGGA TGCCGATGGTAATTTCCGTGAGAAAGAGGTTCCTGTAAGGAGAAGTGGTGACTATTCCACAAAACCCCCTACGGATATCC GCTACATGGACGTTTCCCCAAAACAGGTTATCAGTGTCGCGGCTTCCTTGATTCCATTTCTCGAACACGATGACGCCAAC CGTGCCCTCATGGGTTCAAACATGCAGCGCCAGGCAGTACCTTTGGTATTCCCTGAAACCCCGCGTGTAGGTACCGGTAT GGAAGAAAAGACAGCGTATGATAGCGGTGTTTTGATTAAGGCAAAACGCGCAGGTACTATCGAGTATGTATCTTCCGACA GGGTAATTATCAAGCCTGATCACAGTGAGATCGAAGGTGAGGTTGATTTCTACGATGTGCAGAAGTTCCAGCGGACCAAC CAGGATACCTGTTTCAACCAGAAGCCTCTGGTTAGTTATGGCCAGCATGTTGAAGAAGGCCAGGTTTTGGTTGATGGACC TGCAACGCAGGATGCCGAACTTGCTCTCGGACGAAATATCTTGGTAGGATTCGTTCCTTGGAACGGATACAACTACGAAG ATGCTGTCCTTATCAGTGAAAGGGTTGTAAGGGACGATATCTTTACCTCCATCCATATCAAGGAATTCTCTACGGATATC CGTGAGACTAAACTTGGACCGGAGAAATTGACCAGGGATATTCCCAATACCAGTGAAAAGATGCTTGAGCAGCTTGATGA AGATGGTATTGTGAGAATCGGGACAATGGTCCGCCCAGGCTCAATTCTTGTCGGAAAGGTAACCCCGAAGAGCGAAAGTG ATACGACCCCTGAATTCAAGTTGTTGAACTCAATCTTCGGTGAAAAGGCCAAGGAAGTTCGTGATACCTCCCTGAAGGTT CCCCATGGAACGGAAGGTACGGTTATCGATATCCAGAGGCTTAAAAGAAGTAACAATGACGAGTTGCCACCCGGAGTCGA GGAAACTGTCAAGGTTCTTATTGCCACCAAACGTAAGTTGCGTCAAGGTGACAAGATGGCCGGTCGCCATGGTAACAAGG GTGTTGTAAGCCGGATTCTTCCAGAGGAAGATATGCCTTACATGGAAGATGGTACCCCGCTTGATGTCTGTTTGAATCCG TTGGGCGTTCCTTCACGAATGAACATCGGTCAGTTGATGGAAACCCAGCTTGGTTGGGCAGCTGTCAAACTTGACCAATG GTATTCAACTCCGGTATTCCAGAGTGCGACTATGGCTCAGATTGAAGCAAAGATGGTTGAAGCAGGGCTTCCCGAGAACT CCAAGACGACGTTATATAACGGTCATACCGGTGTTCCTTTTGTAAATCCTGTATTCTGTGGGTATATTTATTACCTCAAG CTACACCACCTTGTCGACGATAAGATGCATGCTCGTTCTACCGGTCCTTATTCCCTGGTTACCCAGCAGCCTCTTGGCGG TAAGGCCCAGTTTGGCGGACAGAGACTCGGAGAAATGGAAGTATGGGCCCTCGAGGCATATGGTGCTGCCAATACCTTGC AGGAATTGCTTACTATCAAGAGCGATGACATGAATGGCCGTGTTAAGATTTATGAAAGTATCGTCAAGGGAGAACCCGCA ACCACTGCTGGAATGCCAGAGGCATTCAACGTATTGGTCCAGGAAATCCGTGGCCTTGCTTTGGATATGGCTGTGTACGA TTCCAAGGGCAAGCAGGTTCCTTTGACGGAACGAGATGAAGAGTTGATCGCCAAGCAGTCGAAAGGCTCCCTCAACTAA Protein sequence : MVAKGKSITRTYIGSDFQEVCELPNLIGIQLDSYERFLQLERFKKNLEPDASFGLEEVFQSTFPIDSPNGEMRLAYKGYT IDFNNIKFSETECKKKGRSYSVPIKVTISLEFSNGEMREKEIFFGDIPLMTDRGTFIINGAERVVVSQIHRSPGVIFSNE KGVYSSRIIPYRGSWLEFEIDDKKHLIFTKIDRKKRILGTLFLRAIGLDSREKIVEHFYKSETIELADDSDLKSSLENRY IYKDVYAVVEGENKKVLRSGDKLHAHEIDELLGLKITSLELINMKGESSLHSDIILNCFEIEDAKYTREGFDEPTKEDVL SPIFSVLMPGEMIAIERAERDLPDMFFSSRRYDLGSVGRYKFNKKFGSGTEEEEENASTDLTVLTPSDIVNTMGFLIKVF IREENVDDIDHLGNRRVRSVGELLQNALKSAFARMERIAKERMNLETGSVKPQDLISIKPIVAAVKEFFGSSQLSQFMDQ VNPLAELTHKRRLNALGPGGLSRDRAGFEVRDVHYTHYGRICPIETPEGPNIGLIVSLANYTRVNQHGFLETPYRKVING VVSKQYRFLDANDEEKYFIAQASARLDADGNFREKEVPVRRSGDYSTKPPTDIRYMDVSPKQVISVAASLIPFLEHDDAN RALMGSNMQRQAVPLVFPETPRVGTGMEEKTAYDSGVLIKAKRAGTIEYVSSDRVIIKPDHSEIEGEVDFYDVQKFQRTN QDTCFNQKPLVSYGQHVEEGQVLVDGPATQDAELALGRNILVGFVPWNGYNYEDAVLISERVVRDDIFTSIHIKEFSTDI RETKLGPEKLTRDIPNTSEKMLEQLDEDGIVRIGTMVRPGSILVGKVTPKSESDTTPEFKLLNSIFGEKAKEVRDTSLKV PHGTEGTVIDIQRLKRSNNDELPPGVEETVKVLIATKRKLRQGDKMAGRHGNKGVVSRILPEEDMPYMEDGTPLDVCLNP LGVPSRMNIGQLMETQLGWAAVKLDQWYSTPVFQSATMAQIEAKMVEAGLPENSKTTLYNGHTGVPFVNPVFCGYIYYLK LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDMNGRVKIYESIVKGEPA TTAGMPEAFNVLVQEIRGLALDMAVYDSKGKQVPLTERDEELIAKQSKGSLN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 54 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP003583.1.gene2745. | Protein | 0.0 | 50 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 49 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 46 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| SpiGrapes_2128 | YP_005062914.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
