Gene Information

Name : HPL003_18220 (HPL003_18220)
Accession : YP_005076609.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3877665 - 3877934 bp
Length : 270 bp
Strand : +
Note : COG1987 Flagellar biosynthesis pathway, component FliQ

DNA sequence : 
ATGACTTCGGAGTTTATTATTTCCCTTGCCGGACAAGCGGTGTACACAGTGCTTAAAGTTAGCGCTCCGATGCTGATTTT
GGGACTGGTCGTCGGTTTGATTATCAGTATTTTTCAGGCGACAACCCAAATTCAGGAGCAGACTTTGGCATTTGTTCCGA
AGATTGTCGCCGTATTACTGGCATTGCTCTTGTTCGGACCTTGGATATTGACGACATTAGTGGATTTTACGTTTAACATT
CTGGACAATTTGTACAAATATATAGGTTAG

Protein sequence : 
MTSEFIISLAGQAVYTVLKVSAPMLILGLVVGLIISIFQATTQIQEQTLAFVPKIVAVLLALLLFGPWILTTLVDFTFNI
LDNLYKYIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 0.004 47
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 0.003 44
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 0.003 44
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 0.007 42
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 0.004 42
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 0.005 42
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 0.007 42
escS AAK26701.1 EscS Virulence LEE Protein 0.002 41
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 0.003 41
escS AAL57528.1 EscS Virulence LEE Protein 0.002 41
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 0.003 41
escS CAC81848.1 EscS protein Virulence LEE II Protein 0.002 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG2015 Protein 6e-08 50
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG2495 Protein 4e-08 49
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG2132 Protein 2e-05 46
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG0395 Protein 0.001 42