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Name : Marpi_1719 (Marpi_1719) Accession : YP_005097403.1 Strain : Marinitoga piezophila KA3 Genome accession: NC_016751 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 1785562 - 1789170 bp Length : 3609 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subunit DNA sequence : GTGAACACCCGGGTGTTAAAAGTGGGTAAAAGAGAAAGGCATTTTTTTGGTAAGGTAAAGGAAGATTTAAACCTTTATCA TGATTTGTTGGAGATTCAGCTTAACTCCTATGAATGGTTTATTAAACATGGAGTTAAAGAGGTGCTTGATAAATATGCAC CAATTACCGTTGAATTAAAAGGGAAGAGAAAAGCAAAAATCTCGCTTGAATTTACAGATGTATGGATTGAAGATCCGCTT TTTGAGGAAATGGAATGTAAGGAAAAAGGACTTTCTTACGTAGTTCCTCTAAAAGCAAAAATAAGAATAACAGATCACAG TACTGGGGAAATCATTGAACCCAGTGATTCGTTATTTTTTGGGAATATTCCAAAGATTACAGATAGAAGCACCTTTATTA TCAATGGTGCGGAGAGGGTAGTAGTTAACCAGCTTGTTAGATCGCCTGGTGTATACTTTGTTAGTGAAGAACAAAAAAGC GTGAAACAAACAAGACCACATTTTGTAGCTCATTTCCTTCCTGTAAAAGGGGCATGGCTTGAAATAATATACAATCCAAA TCCAGGTAAAGATTTCTTACAAATTAGAATCGATAGAAAAAGAAAATTCAATTACTTCCTATTCTTAAGGGCTTTGGGTT ACGACTCAGATTTAGCTTTGTTAGATCTCTATCCAGAAACAATTAGTTTAAATTATGATCTAACAGAATATATTGAAAGA GGCGTAACAATCCTTTCAGACATAAAAGTTCCAGAAGGCTCAGAATTATACAAAGAAACAAAAACATTTAGAGGAGTAAA ATTAACAGAAAAAATAGTTGAAATGCTCTTAGATTTAAATGTAACAGAAATAAAAGTTGCACATATTGTAGCGCAAAATA CACTTGAAATGTTTAAAAAATCATATGAATCAGATGGAAATTTATTAACTCCTGAAGAAGCTTATAAAGAATTATTCAAA AAACTCAGACCTGGTGAAATTCCAAGAGTTAATATAGCTACAGATTACATAAATAATCTCTACTTTAATCCTAATACATT CGATTTCTCATTAATTGGTAGAAAGAAAATCGTCAACAGAATGGGCGATGTATACAGGAAATATTTAATAGAAGTAGAGG GAAAAGATATAGATAAAAGTGAAGATGTAGAATATCCTCATAAAGATGAAAAAACATTAACAAAACTCGACTTAATTCTT GCATCAAGACATTTACTTGAAATGAAAAATAACCCGGAACTCCTTGATACAAGAGATCATCTTGGTAATAAACGTGTAAG ATCAGTTGGGGAATTAATGCAAATTGAATTTGAAAGATCATTCTCAAAAATGCTTCCTGTGTTGAATGAAAAATTAAGTA TAGTTCAAAATATACAAAAATTAAATCCAAATACTCTCGTTAATTCAAGAGCTATTATGACAACAATAAATCAATTCTTT GCAACAAGTCAGTTATCGCAGTTTATGGACCAGGTAAATCCCCTTTCTGAATTAACACATAAAAGAAGATTATCAGCAAT AGGTCCGGGCGGTTTAAAGAGAGAACATGCAAAGTTTGAAGTTAGGGACGTTCACCATTCACATTATGGAAGAATGTGTC CTATTGAAACACCAGAAGGTGCCAATATCGGTTTAATTACTTCATTGGCAATTCTTTCAAGGGTTGATGAATTTGGATTC CTTGAAACACCATATTATAAAGTAAAAGATGGTAAGGTTTTATATGATAAAGGAGTATATTGGTTAACTGCAGATCAGGA AGAAGAAAAAATAATTGCTCCTGCATCTGTTGAAATAGATGAAAATGGAATGATTAAAGCTGAATATGTTGAAATTAGGC ATGCCGGTAAAGTTACATATGTTCATAGAGAAGATGTAGAATTTATAGCAGTAACTCCAAAACAGATTGTATCTGTTTCA ACATCATTAATACCATTCCTTGAACACGATGATGCTAACCGTGCGTTGATGGGTTCAAACATGCAGAGACAGGCAGTACC TTTAATGATTACAGAAGCACCATTTGTTGGGACAGGTGTTGAATGGTTAGCAGCAAGGGATTCAGGTTATGTAATTAAGG CAAAACATAGAGGAAAGGTTTCATACGTAGATGCTAAAACAATAATAATAAATAGAATAGATGAAGAAGGAAATGAAATA TTAGATAAAAATGGAAATCCAGTTCAGGACAAATATACATTATGGAAATTCATAAGATCAAACCAGGATACAACAGTAAA TCAAAGACCAATTGTTGAAATGGGTGAAGTTGTAGAAAAAGGAGATCCAATTGCAGATGGTCCTGCAATAGATATGGGAG AATTAGCACTTGGTAAAAATGTTCTTGTAGCATTTATGCCATGGGAAGGATACAACTTCGAAGATGCTATCCTTGTTAAT GAAGAACTACTTGAAAGGGATACATTTACATCATTACATATAGAAGTATATGAAACAAAAGCAATGGATACACAACTTGG TCCAGAAGAAATTACAGCAGATATTCCTAACGTAAAGAAAGAGTCATTAAGAAACCTCGATGAAAACGGTATTGTAAGAG TTGGTGCATATGTAACTTCAGGTGATATACTTGTTGGTAAAGTTACACCAAGAGGAGAATCAGAAACATCACCAGAAGAA AAACTCATAAGATCCGTTTTTGGAGATAGAGGTAAGGATGTAAAAGATACATCATTAACAGTACCTCATGGAATTGAAGG TAGAGTTATTGATGTTAAAGTATATACAAGAAAAGATATTCCAGATTTAGAAACAGGTGTAAATCAATACGTAAAAGTTT ATATAGCTTCAAAGAAAACATTAAATGTTGGAGATAAATTGGCAGGGCGTCACGGTAATAAGGGTGTTGTTTCAAACATC TTGAGAAAAGAAGATATGCCATTCCTGCCAAATGGAAAGCCAATTGAAATGATCCTTAGTCCTTTAGGGGTTCCATCACG TATGAACCTTGGGCAGGTTTTAGAAATGCACCTTGGTTGGTTAGCAAAATTAACAGGAAGACATTTTGCAACACCAATAT TTGATGGTGCAAAAGAATATGAAATAATGGAAGAATTATATAAAGCAAGAAAAAACAACAGAATGGACGAATTAGATGCA GTTCGTAAAGAATATGGTCTTGATCTTGGTGACGATCCAAAAACAGAAAGTGGAAAGATCGTATTAAGAGATGGAAGAAC AGGAGAACCATTTGATTATCCTATTGCAATAGGATATATGTACATGTTAAGACTTGTGCATATTGCGAAAGATAAAATGC ACGCACGTTCTACAGGTCCATATTCATTAATTCACCAGCAACCACTTGGAGGTAAAGCTCACTTTGGTGGTCAGAGATTT GGTGAAATGGAAGTTTGGGCTTTGGAAGCATATGGTGCAGCACATACATTAACAGAAATGCTTACATACAAATCAGATGA TATTAAAGGAAGAAATGAAGTATATAAAGCAATCTTAAATGGTAAGAATTTACCTGATCCTGGAATTCCAGAAAGTTTCA AAGTTCTTGTAAAGGAATTACAGGGATTAATGCTCGATGTTCGTTTGTATGATGAGGACGGTAACGAATTAGATGTTGAC AAATTATAA Protein sequence : MNTRVLKVGKRERHFFGKVKEDLNLYHDLLEIQLNSYEWFIKHGVKEVLDKYAPITVELKGKRKAKISLEFTDVWIEDPL FEEMECKEKGLSYVVPLKAKIRITDHSTGEIIEPSDSLFFGNIPKITDRSTFIINGAERVVVNQLVRSPGVYFVSEEQKS VKQTRPHFVAHFLPVKGAWLEIIYNPNPGKDFLQIRIDRKRKFNYFLFLRALGYDSDLALLDLYPETISLNYDLTEYIER GVTILSDIKVPEGSELYKETKTFRGVKLTEKIVEMLLDLNVTEIKVAHIVAQNTLEMFKKSYESDGNLLTPEEAYKELFK KLRPGEIPRVNIATDYINNLYFNPNTFDFSLIGRKKIVNRMGDVYRKYLIEVEGKDIDKSEDVEYPHKDEKTLTKLDLIL ASRHLLEMKNNPELLDTRDHLGNKRVRSVGELMQIEFERSFSKMLPVLNEKLSIVQNIQKLNPNTLVNSRAIMTTINQFF ATSQLSQFMDQVNPLSELTHKRRLSAIGPGGLKREHAKFEVRDVHHSHYGRMCPIETPEGANIGLITSLAILSRVDEFGF LETPYYKVKDGKVLYDKGVYWLTADQEEEKIIAPASVEIDENGMIKAEYVEIRHAGKVTYVHREDVEFIAVTPKQIVSVS TSLIPFLEHDDANRALMGSNMQRQAVPLMITEAPFVGTGVEWLAARDSGYVIKAKHRGKVSYVDAKTIIINRIDEEGNEI LDKNGNPVQDKYTLWKFIRSNQDTTVNQRPIVEMGEVVEKGDPIADGPAIDMGELALGKNVLVAFMPWEGYNFEDAILVN EELLERDTFTSLHIEVYETKAMDTQLGPEEITADIPNVKKESLRNLDENGIVRVGAYVTSGDILVGKVTPRGESETSPEE KLIRSVFGDRGKDVKDTSLTVPHGIEGRVIDVKVYTRKDIPDLETGVNQYVKVYIASKKTLNVGDKLAGRHGNKGVVSNI LRKEDMPFLPNGKPIEMILSPLGVPSRMNLGQVLEMHLGWLAKLTGRHFATPIFDGAKEYEIMEELYKARKNNRMDELDA VRKEYGLDLGDDPKTESGKIVLRDGRTGEPFDYPIAIGYMYMLRLVHIAKDKMHARSTGPYSLIHQQPLGGKAHFGGQRF GEMEVWALEAYGAAHTLTEMLTYKSDDIKGRNEVYKAILNGKNLPDPGIPESFKVLVKELQGLMLDVRLYDEDGNELDVD KL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 2e-167 | 42 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 2e-167 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 50 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 5e-170 | 43 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 1e-166 | 43 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 8e-168 | 42 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 8e-168 | 42 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 8e-168 | 42 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 8e-168 | 42 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 1e-167 | 42 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 1e-165 | 41 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 1e-165 | 41 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 5e-166 | 41 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 2e-165 | 41 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 3e-167 | 41 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 4e-166 | 41 |
| Marpi_1719 | YP_005097403.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 3e-157 | 41 |
