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Name : rpoB (BF638R_4052) Accession : YP_005113025.1 Strain : Bacteroides fragilis 638R Genome accession: NC_016776 Putative virulence/resistance : Unknown Product : putative DNA-directed RNA polymerase beta chain Function : - COG functional category : - COG ID : - EC number : - Position : 4769279 - 4773091 bp Length : 3813 bp Strand : - Note : - DNA sequence : ATGTCTTCAAATACTGTAAATCAAAGAGTTAATTTTGCTTCGACTAAGAATCCGCTTGAATATCCGGATTTCCTGGAAGT ACAATTGAAGTCATTCCAAGACTTTCTACAACTAGATACCCCACCTGAGAAGCGTAAAAAAGAGGGATTGTATAAAGTAT TTGCCGAAAACTTCCCAATTGCCGACACAAGAAACAATTTTGTTCTTGAGTTTCTGGACTATTATATTGATCCGCCGCGC TATACCATTGATGATTGTATAGAGCGTGGGCTCACATATAGTGTTCCATTGAAAGCGAAACTCAAGCTTTACTGTACAGA CCCCGATCATGAGGATTTCGATACAGTGATTCAAGATGTGTTCCTTGGTCCTATACCTTACATGACTGACAAGGCAACTT TTGTCATCAATGGTGCTGAGCGTGTAGTTGTGTCGCAGCTTCACCGTTCTCCGGGCGTATTCTTCGGTCAGAGTGTACAT GCTAATGGTACAAAGTTGTACTCAGCCCGTATCATCCCGTTTAAGGGATCATGGATTGAGTTCGCTACCGATATTAACAA CGTAATGTACGCTTATATTGATCGTAAGAAGAAATTGCCTGTTACTACGCTGTTAAGAGCTATCGGCTTTGAGAACGACA AGGACATTCTTGAGATTTTTAACCTGGCTGAAGATGTGAAGGTTAATAAGACTAATCTCAAGAAAGTAGTAGGTCGTAAA CTGGCTGCGCGTGTCTTGAAAACCTGGATTGAAGATTTCGTTGATGAAGATACCGGTGAAGTTGTTTCTATTGAACGTAA TGAAGTCATTATCGACCGTGAAACAGTAATCGAACCGGAACATATAGATGAAATAATTGACTCGGGCGTTCAAAACATCC TTATTCACAAGGAAGAACCGAACCAGTCCGACTACTCTATTATATATAATACCCTTCAGAAGGACCCGAGTAACTCGGAA AAGGAGGCTGTGCTTTATATCTACCGTCAGTTGCGTAATGCAGACCCTGCCGATGATGCCAGTGCCCGTGAAGTTATTAA TAACCTGTTCTTCTCTGAAAAACGGTATGACCTTGGTGATGTAGGTCGTTATAGAATCAATAAGAAATTGAACCTGACGA CAGACATGGACGTGCGTGTCCTCACTAAAGAAGATATTATCGAGATCATCAAATATCTGATTGAGCTGATTAACTCAAAA GCAGATGTAGATGATATCGACCACTTGAGCAACCGTCGCGTACGTACTGTAGGCGAACAGTTGTCCAATCAGTTCGCTGT CGGTTTGGCACGTATGTCACGTACCATCCGCGAACGAATGAACGTTCGTGACAATGAGGTGTTTACTCCGATTGACCTGA TCAATGCGAAGACTATTTCTTCTGTGATCAATTCATTCTTCGGAACTAACGCATTGTCACAGTTTATGGACCAGACAAAC CCGTTGGCTGAAATCACTCACAAACGTCGTATGTTTGCTCTTGGTCCTGGTGGTTTGTCTCGTGAACGTGCCGGATTTGA GGTTCGTGACGTTCACTATACACACTACGGACGCCTTTGTCCGATTGAAACACCGGAAGGTCCGAATATCGGTTTGATTT CGTCACTTTGTGTGTTTGCCAAGATTAATGATCTCGGCTTTATTGAAACTCCTTACCGTAAGGTAGATAACGGAAAGGTA GATCTGTCTGAGAATGGACTCGTTTACCTGACGGCTGAGGAAGAAGAAGCTAAGATCATAGCACAGGGTAATGCTCCGTT GAATGATGACGGTACATTTATCCGTAATAAGGTTAAGTCTCGTCAGGATGCCGATTATCCGGTTGTAGAACCTTCGGAAG TAGAGTTGATGGACGTTGCTCCTCAACAGATTGCTTCTATCGCTGCATCTTTGATTCCCTTCCTTGAACATGATGACGCT AACCGTGCGTTGATGGGATCGAACATGATGCGCCAGGCTGTTCCTTTGCTGAGAAGCGAAGCTCCAATCGTAGGTACAGG TATTGAACGCCAGTTGGTACGTGATTCACGTACTCAGATTGCTGCCGAAGGTGATGGAGTGATTGATTTTGTAGATGCTA CTACTATTCGTATTCTATACGATCGTACAGAAGATGAAGAGTTTGTAAGTTTTGAGCCGGCATTAAAAGAATATAGAATA CCGAAGTTCCGTAAAACGAACCAGAATATGACAATCGACCTTCGGCCAACTTGCAATAAAGGTGATCGTGTGACGAAAGG TCAGATTCTGACAGAAGGTTATTCTACTGAAAATGGAGAACTCGCTTTGGGTAAGAATCTGTTGGTTGCTTACATGCCTT GGAAAGGTTATAATTACGAGGATGCTATCGTGTTGAATGAACGTGTGGTTCGTGAAGACTTGCTGACTTCAGTACACGTA GAAGAGTATTCACTCGAAGTTCGTGAAACCAAGCGAGGAATGGAAGAGTTGACTTCTGATATTCCTAACGTGAGTGAGGA AGCCACTAAGGATTTGGACGAGAATGGTATCGTACGTGTCGGTGCACGTATTCAGCCGGGTGATATATTGATTGGTAAGA TTACACCGAAAGGTGAATCTGATCCTTCTCCGGAAGAAAAATTGCTTCGTGCTATCTTTGGTGATAAAGCCGGTGATGTG AAAGATGCTTCTTTGAAAGCATCTCCTTCTCTGAAGGGGGTAATTATTGATAAGAAATTGTTCTCACGTGTCATCAAGAA TCGTAGTTCTAAGTTGGCTGATAAGGCATTGCTTCCGAAAATTGACGATGAATTTGAGTCTAAGGTAGCTGACTTGAAAC GTATCTTGGTAAAGAAATTGATGGCATTGACAGAAGGAAAGGTATCTCAGGGCGTGAAAGACTACTTGGGAGCTGAAGTC ATAGCTAAAGGCTCTAAGTTTAGTGCTTCTGACTTCGATTCACTTGATTTCACCGCGATTCAGCTGAGCGACTGGACCAA TGATGATCATGCGAATGGTATGATTCGTGACTTGATCCTGAACTTTATCAAGAAGTACAAAGAACTTGATGCTGAACTGA AGCGTAAAAAGTTCGCTATCACAATCGGTGATGAACTGCCTGCAGGTATCATTCAGATGGCGAAAGTATATATTGCTAAA AAACGTAAGATTGGTGTAGGTGATAAGATGGCCGGACGTCACGGTAATAAAGGTATTGTGTCACGTGTTGTTCGTCAAGA AGACATGCCGTTCCTTGAAGATGGAACTCCGGTAGACATTGTATTGAACCCGTTGGGTGTGCCTTCTCGTATGAATATCG GTCAGATTTTTGAGGCTGTTCTCGGACGTGCCGGAAAGAATTTGGGTGTGAAGTTCGCTACGCCGATTTTTGACGGTGCA ACTTTGGATGACTTGAACGAGTGGACAGACAAAGCTGGTCTACCACGCTATTGCAAAACTTATCTTTGTGATGGTGGTAC AGGCGAACGCTTTGACCAACCAGCAACCGTAGGTGTTACCTATATGTTGAAACTCGGTCACATGGTTGAAGACAAGATGC ACGCACGTTCTATCGGACCATACTCATTGATTACTCAGCAACCTCTTGGTGGTAAAGCTCAGTTTGGTGGTCAGCGTTTC GGAGAGATGGAGGTTTGGGCACTCGAAGGTTTCGGTGCATCGCATATTCTCCAGGAGATTCTGACAATCAAGTCGGACGA TGTCGTTGGACGTTCTAAGGCTTACGAAGCCATTGTAAAGGGCGAACCCATGCCACAGCCGGGTATTCCGGAATCTCTGA ACGTGTTGTTGCACGAATTAAGAGGATTGGGCCTGAGCATCAATTTGGAATAA Protein sequence : MSSNTVNQRVNFASTKNPLEYPDFLEVQLKSFQDFLQLDTPPEKRKKEGLYKVFAENFPIADTRNNFVLEFLDYYIDPPR YTIDDCIERGLTYSVPLKAKLKLYCTDPDHEDFDTVIQDVFLGPIPYMTDKATFVINGAERVVVSQLHRSPGVFFGQSVH ANGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFENDKDILEIFNLAEDVKVNKTNLKKVVGRK LAARVLKTWIEDFVDEDTGEVVSIERNEVIIDRETVIEPEHIDEIIDSGVQNILIHKEEPNQSDYSIIYNTLQKDPSNSE KEAVLYIYRQLRNADPADDASAREVINNLFFSEKRYDLGDVGRYRINKKLNLTTDMDVRVLTKEDIIEIIKYLIELINSK ADVDDIDHLSNRRVRTVGEQLSNQFAVGLARMSRTIRERMNVRDNEVFTPIDLINAKTISSVINSFFGTNALSQFMDQTN PLAEITHKRRMFALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVFAKINDLGFIETPYRKVDNGKV DLSENGLVYLTAEEEEAKIIAQGNAPLNDDGTFIRNKVKSRQDADYPVVEPSEVELMDVAPQQIASIAASLIPFLEHDDA NRALMGSNMMRQAVPLLRSEAPIVGTGIERQLVRDSRTQIAAEGDGVIDFVDATTIRILYDRTEDEEFVSFEPALKEYRI PKFRKTNQNMTIDLRPTCNKGDRVTKGQILTEGYSTENGELALGKNLLVAYMPWKGYNYEDAIVLNERVVREDLLTSVHV EEYSLEVRETKRGMEELTSDIPNVSEEATKDLDENGIVRVGARIQPGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDV KDASLKASPSLKGVIIDKKLFSRVIKNRSSKLADKALLPKIDDEFESKVADLKRILVKKLMALTEGKVSQGVKDYLGAEV IAKGSKFSASDFDSLDFTAIQLSDWTNDDHANGMIRDLILNFIKKYKELDAELKRKKFAITIGDELPAGIIQMAKVYIAK KRKIGVGDKMAGRHGNKGIVSRVVRQEDMPFLEDGTPVDIVLNPLGVPSRMNIGQIFEAVLGRAGKNLGVKFATPIFDGA TLDDLNEWTDKAGLPRYCKTYLCDGGTGERFDQPATVGVTYMLKLGHMVEDKMHARSIGPYSLITQQPLGGKAQFGGQRF GEMEVWALEGFGASHILQEILTIKSDDVVGRSKAYEAIVKGEPMPQPGIPESLNVLLHELRGLGLSINLE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 44 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 44 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 43 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 43 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 43 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 43 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 43 |
| rpoB | YP_005113025.1 | putative DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 43 |
