|
Name : vrgS (SL1344_0284) Accession : YP_005180218.1 Strain : Salmonella enterica SL1344 Genome accession: NC_016810 Putative virulence/resistance : Unknown Product : Type VI secretion protein Function : - COG functional category : - COG ID : - EC number : - Position : 329849 - 332038 bp Length : 2190 bp Strand : + Note : Similar to several Rhs proteins e.g. Escherichia coli RhsG accessory genetic element VgrG protein TR:O52672 (EMBL:AF044503) (713 aa) fasta scores: E(): 0, 32.6% id in 580 aa DNA sequence : ATGAGTTTTGTATCCACAAATAATAAATCCGGTATGGGAGGGCTGACGACAACCACGCCGCCGATAACCGGAGAAAGTGG CGGTGTCACCGCAGATTCAGTCGCCGGAAGCGTGGCAGATGCGGCGGAATCCGCCGTGGAACAGGCTGCGGGATCGCTAT TTGGCGCATTGCCGGAGCCATCAGGACTGGTGAAAGCCGCGGTAGCAGCGGCGCAGGCTGCCGCCGCCGCAGGTATGGCG CAGGATGCGGTATCGGCCATCGTCTCTGCTGTTGCAGGCGGGCCGGGGGCGCATAATGTGACGGTCAGCGGCAGCGCCGT ACCGCCGGGCGCATTACTGTTCGCCAGCCTGGACGGCGGCGAAACATTAAGTGAACTGTTCAGCTATGTGGTACAGCTAA AAACGCCCGACACCCTGAATCTGGGCTATGTCTCCCCGGCGGCCAACCTGCCGCTCAAACCGATGGTGGGCAAAGATCTG TGCGTCAACATCGAACTGGATGGTGGCGGTAAACGACATATCAGCGGGCTGGTCACGGCGGCGCGGGTGGTGGGCCATGA AGGGCGTTCGGTTACCTATGAGCTGCGTATGGAGCCGTGGGTAAAACTGCTGACCCATACCAGCGACTACAAAGCATTCC AGAATAAAACCGTGGTGGATATTCTGGATGAGGTTCTGGCGGAATATCCCTACCCGGTGGAAAAGCGGCTGGTGGAAAGC TACCCGGTACGCACCTGGCAGGTGCAGTACGGTGAAACTGATTTTGATTTTCTTCAGCGACTGATGCAGGAGTGGGGCAT CTACTGGTGGTTTGAGCACAGCGAGGACAGCCACACGCTGGTGCTGGCGGATGCCATCAGCGCCCACAAAGCATGTCCGG ACTCGCCGCTGGTCGAGTGGCACCAGGAAGGGCTGAAGCTGGACAAGGAGTTTATCCACACTATCACGGCAAACGAGAGC CTGCGGACTGGACAGTGGGTGCTGGATGATTTCGATTTTACGAAGCCACGTTCATTGCTGGCAAACACCGTGGCAAACCC GCGTGAAACCGGTCATGCCACCTACGAGCATTATGAGTGGCCGGGAGACTACTTCGACAAGAGTGAAGGCGAGATGCTGA CGCGCATTCGTATGGAAGCGCAGCGCAGCCCCGGCAGTCGGGTGCTGGGGGGAGGGAATATCCGCACACTCATGACCGGT TATACCTTCACGCTGGAAAACTATCCCACCGCCGAAGTCAATCAGGAATATCTGCTGATGCAGACCTTGCTGTTTGTGCA GGACAACGCGCAGCACAGCGGGCAGGACCAGCACTTTACCTTTTCCACCCGTTTTGAACTGCACCCCACCCGCGAGGTGT TCCGCCCGCAGCGGACGGTGAGCAAACCCCACACCAAAGGGCCGCAGAGCGCCATCGTCACCGGCCCGGCGGGCCAGGAA ATCTGGACGGATCAGTACGGGCGGGTAAAGGTACAGTTTGGTTGGGATCGCTACGGCAAAATGGATGAAAACAGCACCTG CTGGATACGCGTCAGCTACCCGTGGGCGGGCAAAGGCTTCGGGATGATCCAGATCCCGCGTATCGGCCAGGAAGTGCTGG TGGATTTCAAAAACGGCGATCCGGATCTGCCGATCATCGTGGGGCGTACCTACAACCAGGACACCATGCCGCCGTGGGGA CTGCCGGGAATGGCGTCGCAGAGCGGGATCTTCAGCCACTCGCTGTATGGCGGGCCAACGAACGGCAACATGCTGCGTTT TGACGACAAAACGGGCGCGGAGGAAGTGAAGTTCCACGCGGAAAAAGATCTCAACACCACGGTGAAGAATAATGAAACGC ATACGGTTATGGTGGATCGCACTAAAACCATTATTAAAAATGAAACCAACAGTATTGGTGAGGACAGAAACACCACGGTA ACGAAGAATGACGGCCTTTCCGTAAAACTGGCGCAGACGATCAATATCGGCACCACTTATCGTTTAGATGTTGGCGATCA ATTCACGCTTCGCTGCGGCAATGCGGCGCTTGTTTTACATAAGGACGGCTCCATTGAGTTTTGTGGCAAGCAACTGATGT TACATACCAGCGATGTCATGCAACTGATTGGTAAAGGTATTGATATGAACCCGGATGGCGGCACAGCCGTAACCGCCGAT GATATTGCCCCCCTTCTCACCTCTGAGTGA Protein sequence : MSFVSTNNKSGMGGLTTTTPPITGESGGVTADSVAGSVADAAESAVEQAAGSLFGALPEPSGLVKAAVAAAQAAAAAGMA QDAVSAIVSAVAGGPGAHNVTVSGSAVPPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDL CVNIELDGGGKRHISGLVTAARVVGHEGRSVTYELRMEPWVKLLTHTSDYKAFQNKTVVDILDEVLAEYPYPVEKRLVES YPVRTWQVQYGETDFDFLQRLMQEWGIYWWFEHSEDSHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITANES LRTGQWVLDDFDFTKPRSLLANTVANPRETGHATYEHYEWPGDYFDKSEGEMLTRIRMEAQRSPGSRVLGGGNIRTLMTG YTFTLENYPTAEVNQEYLLMQTLLFVQDNAQHSGQDQHFTFSTRFELHPTREVFRPQRTVSKPHTKGPQSAIVTGPAGQE IWTDQYGRVKVQFGWDRYGKMDENSTCWIRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWG LPGMASQSGIFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVMVDRTKTIIKNETNSIGEDRNTTV TKNDGLSVKLAQTINIGTTYRLDVGDQFTLRCGNAALVLHKDGSIEFCGKQLMLHTSDVMQLIGKGIDMNPDGGTAVTAD DIAPLLTSE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0319 | NP_454896.1 | Rhs-family protein | Not tested | SPI-6 | Protein | 0.0 | 99 |
