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Name : Rahaq2_4242 (Rahaq2_4242) Accession : YP_005202144.1 Strain : Rahnella aquatilis CIP 78.65 Genome accession: NC_016818 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 4516606 - 4520634 bp Length : 4029 bp Strand : - Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGCATTCGTAAGGATTTTGGTAAACGTCCACAAGTTTTGGACATTCCATATCT CCTTTCTATCCAGCTTGACTCGTTCCAGAAGTTTATCGAGCAAGATCCGGAAGGCCAGTACGGTCTGGAAGCTGCATTCC GTTCTGTATTCCCTATCAAGAGTTACAGCGGTAACTCTGAGCTGCAATACGTTAGCTACCGTCTTGGTGAGCCTGTATTC GACGTTAAAGAATGCCAGATCCGTGGTGTGACGTTCTCCGCGCCACTGCGCGTGAAACTGCGCCTGGTGATCTACGAACG CGAAGCACCAGAAGGTACGGTCAAAGACATCAAGGAACAAGAAGTCTATATGGGCGAAATTCCGCTCATGACCGAAAATG GTACCTTTGTGATTAACGGTACTGAGAGGGTTATCGTATCTCAGCTGCACCGTAGTCCGGGCGTATTCTTCGACAGCGAT AAGGGTAAAACCCACTCATCGGGTAAAGTGCTTTATAACGCACGTATCATTCCTTACCGCGGTTCATGGTTGGATTTCGA GTTTGACCCGAAAGACAACCTGTTTGTACGTATTGACCGTCGCCGTAAATTGCCTGCGACCATCATTCTGCGTGCATTAA ATTACACGACTGAACAGATCCTTGACCTGTTCTTTGACAAGGTGACTTACCAGATCCGCGACAACAAGTTGCAAATGGAA CTGGTACCTGAGCGCCTGCGCGGTGAAACAGCTTCCTTTGATATCGAAGCTGACGGCAAAGTCTATGTAGAAAAAGGCCG CCGCATCACTGCCCGTCATATTCGTCAGCTTGAAAAAGACGAAATTCAGCGCATCGAAGTTCCTGTTGAGTACATCGCAG GGAAAGTGGTCTCTAAAGACTACATCGACACCAATACCGGTGAGCTGATCGTCCCTGCTAACATGGAATTGTCTCTGGAT CTGCTGGCGAAACTGAGCCAGTCCGGTCACAAAACCATTGAAACGCTGTTCACCAACGACCTCGATCATGGCGCGTACAT GTCCGAGACCATTCGCGTCGACCCAACCAGCGATCGCTTGAGCGCACTGGTTGAGATCTACCGAATGATGCGTCCTGGTG AGCCACCAACGCGTGAAGCGGCGGAAAGCCTGTTTGAGAACCTGTTCTTCTCTGAAGATCGTTACGACCTGTCTGCTGTA GGTCGTATGAAGTTCAACCGTTCTCTGCTGCGTGATGAAATCGAAGGCTCAGGTATCCTGAGCAAAGACGACATCATTCA GGTAATGAAAAAGCTGATCGGCATTCGTAACGGCCAGGGCGAAGTGGATGATATCGACCACTTGGGCAACCGTCGTATTC GTTCCGTCGGCGAAATGGCTGAAAACCAATTCCGTGTAGGTCTGGTTCGTGTTGAGCGTGCTGTTAAAGAGCGTCTGTCT CTGGGCGACCTCGACACGCTGATGCCTCAGGATATGATCAACGCTAAGCCGATTTCGGCTGCGGTGAAAGAATTCTTCGG CTCAAGCCAGCTGTCACAATTTATGGACCAGAACAACCCGTTGTCTGAGATCACGCACAAGCGTCGTATCTCTGCATTGG GCCCGGGCGGTTTGACCCGTGAACGTGCTGGCTTTGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCA ATCGAAACGCCAGAAGGTCCAAACATCGGTCTGATCAACTCCTTGTCTGTTTATGCACAGACCAATGAGTACGGTTTCCT GGAAACCCCTTACCGTCGCGTACGTGATGGTCTGGTGACTGATGAAATCAACTATCTGTCTGCTATTGAAGAAGGCAACT TCGTTATCGCTCAGGCGAACTCCAACCTGGACGAAGAAGGGCGCTTCATTGAAGACCTGGTCACTTGTCGTAGCAAAGGC GAATCAAGCCTGTTTAGCCGCGATCAGGTTGACTACATGGACGTTTCTACCCAGCAGGTGGTATCCGTTGGTGCTTCACT GATTCCATTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCAGTTCCGACCCTGC GCGCTGATAAGCCGCTGGTAGGTACTGGTATGGAACGTGCTGTAGCGGTTGACTCCGGTGTGACTGCCGTAGCCAAACGT GGCGGTATTGTTCAGTACGTGGATGCATCCCGTATCGTTATTCGTGTTAACGAAGAAGAGATGTACCCGGGCGAAGCAGG TATCGACATTTATAACCTGACCAAATACACCCGTTCTAACCAGAACACCTGCATCAACCAGATGCCGTGTGTGAATCTGG GCGAACCTATCGAGCGCGGCGACGTGCTGGCAGATGGTCCGTCAACAGATCTGGGCGAACTGGCTCTGGGTCAGAACATG CGTGTCGCGTTCATGCCCTGGAACGGTTACAACTTCGAAGACTCCATCCTGGTCTCCGAACGTGTTGTGCAGGAAGACCG CTTCACCACCATCCATATCCAGGAACTGGCATGTGTGTCCCGTGACACCAAGTTAGGGCCTGAAGAGATCACCGCTGACA TCCCTAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTATATCGGTGCTGAAGTGACCGGTGGT GACATTCTGGTGGGTAAGGTAACGCCTAAAGGCGAAACCCAGCTGACGCCAGAAGAGAAACTGCTGCGTGCGATCTTCGG TGAGAAAGCATCTGATGTTAAAGACTCTTCTCTGCGTGTACCAAACGGCGTTTCCGGTACGGTTATCGACGTGCAAGTCT TCACCCGCGATGGCGTGGAAAAAGACAAGCGTGCGTTGGAAATCGAAGAGATGCAGCTGAAGCAGGCTAAGAAAGACCTG ACTGAAGAGCTGCAGATCCTGGAAGCCGGTCTGTTTGCACGTATCCAGTCTGCGCTGGTTGCTGGCGGTGTTGAAGCTGA CAAGTTGGGCAAATTGCCTCGCGATCGTTGGTTAGAACTGTCACTGACTGACGAAGACAAACAGAATCAGTTGGAACAGC TTGCTGAACAGTACGACGAACTGAAATCCGAGTTTGAGAAAAAACTCGAAGCTAAGCGTCGTAAAATCACTCAGGGCGAT GACCTGGCACCTGGTGTGCTGAAAATCGTTAAAGTGTATTTGGCCGTTAAACGTCAAATCCAGCCTGGTGACAAGATGGC AGGCCGCCACGGTAACAAAGGTGTTATCTCCAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGGACACCTG TTGATATCGTACTGAACCCGCTGGGCGTTCCATCACGTATGAACATTGGTCAGATTTTGGAAACCCACCTGGGTATGGCC GCGAAAGGTATTGGTGAAAAAATCAATGCCATGCTGAAGAAACAGGAAGAAGTTTCTAAGCTGCGCGAGTTCATCCAGCG TGCCTATGATCTGGGCGACGACGTACGTCAGAAAGTGGATCTGAACACCTTTACCGATGACGAAGTACTGCGTCTGGCTG AGAACCTGAAAAAAGGTATGCCAATCGCAACACCAGTCTTCGACGGTGCGAAAGAGACAGAGATCAAGCAACTGCTTGAA ATGGGCGGAATCCCAACCTCTGGCCAGATCACACTGTTTGACGGCCGTACCGGCGAGCAATTCGAGCGTCAGGTTACCGT CGGCTATATGTACATGCTGAAACTGAACCACCTTGTTGACGATAAGATGCACGCGCGTTCTACCGGTTCTTACAGCCTTG TTACTCAGCAGCCGCTGGGTGGTAAAGCTCAGTTCGGTGGTCAGCGCTTCGGTGAGATGGAAGTGTGGGCACTGGAAGCA TACGGTGCCGCGTATACCCTGCAGGAAATGCTGACTGTTAAGTCCGATGACGTGAACGGCCGTACTAAGATGTATAAAAA CATCGTAGATGGCGATCATCGTATGGAACCAGGCATGCCGGAATCCTTCAACGTACTGTTGAAAGAAATCCGTTCTCTGG GTATCAACATCGAGCTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIKSYSGNSELQYVSYRLGEPVF DVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFDKVTYQIRDNKLQME LVPERLRGETASFDIEADGKVYVEKGRRITARHIRQLEKDEIQRIEVPVEYIAGKVVSKDYIDTNTGELIVPANMELSLD LLAKLSQSGHKTIETLFTNDLDHGAYMSETIRVDPTSDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKDDIIQVMKKLIGIRNGQGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVTDEINYLSAIEEGNFVIAQANSNLDEEGRFIEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGIVQYVDASRIVIRVNEEEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL TEELQILEAGLFARIQSALVAGGVEADKLGKLPRDRWLELSLTDEDKQNQLEQLAEQYDELKSEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGEKINAMLKKQEEVSKLREFIQRAYDLGDDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKETEIKQLLE MGGIPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 96 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 95 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 95 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 95 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 95 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 92 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 73 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| Rahaq2_4242 | YP_005202144.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 64 |
