Gene Information

Name : PSF113_2454 (PSF113_2454)
Accession : YP_005207856.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2875413 - 2875946 bp
Length : 534 bp
Strand : -
Note : -

DNA sequence :

TTGCAAAAAGCTGCAGCCATGAGCGAAACCCTGCCCGCGAACAACGACAATCATCTGCGCGTGATCGAAGCGCTGTACGC
AGGTCATCACGGCTGGCTGTACGCCACGCTGAAGAAGAAACTGGGCAACGCCATGGATGCGGCGGACCTGGCGCAAGACA
CCTTCACGCGCATTCTGGCCTCGCAAGTCACCGCCATTGACCAACCCCGGGCCTACCTGAGCTGCGTGGCCAAGGGCATC
CTCGTCAACTGGTATCAGCGCAAGGCATTGGAACGTGCTTACCTGGAGGCGCTCGCGCATTTGCCGGCCCAGGAAGTGCC
GTCCCCTGAGTTGCGTTTCCTCGTGCTGGAAACCCTGCACGACATCGACGCCATGCTCGACACGCTCCCGGCACCGGTGA
AACGGGCATTCCTGCTGTCGCAGATCGGCGGCCTGAAATACGACGACATCGCCCAGCAGTTGAACGTCTCGCTGATCACG
GTCAAACGCTACATGAAGCAGGCGTTCGTGCAGTGCCTGATGCTGGTGGACTGA

Protein sequence :

MQKAAAMSETLPANNDNHLRVIEALYAGHHGWLYATLKKKLGNAMDAADLAQDTFTRILASQVTAIDQPRAYLSCVAKGI
LVNWYQRKALERAYLEALAHLPAQEVPSPELRFLVLETLHDIDAMLDTLPAPVKRAFLLSQIGGLKYDDIAQQLNVSLIT
VKRYMKQAFVQCLMLVD

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	7e-33	48

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
PSF113_2454	YP_005207856.1	ECF subfamily RNA polymerase sigma-70 factor	VFG1049	Protein	3e-33	48