Gene Information

Name : PSF113_4845 (PSF113_4845)
Accession : YP_005210229.1
Strain : Pseudomonas fluorescens F113
Genome accession: NC_016830
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5633910 - 5634398 bp
Length : 489 bp
Strand : +
Note : -

DNA sequence : 
TTGCCGCCTGCACACACCGTCGAAGTGCTCTACAACGCCCATAAAAGCTGGCTCAACGGCTGGTTGAGACGCAGGCTCGG
CTGCCCCGAAAGCGCCGCCGACCTGGCACAGGACACGTTTGTACGGGTACTGACCGCGCACGATCCACAACCGATCCTCG
AACCTCGGGCTTTTCTCACCACCATCGCCAAGCGTGTGTTGTTCAACCACTACCGTCGCCAGGACCTGGAGCGGGCCTAC
CTCGATGCACTTGCCCAACTGCCCGAGCAAGTGGCTCCGTCGGAAGAGGAACGGGCAATCATCCTGCAAACCCTGCTGGA
GCTCGATCAATTGCTCGATGGCCTGCCGCGTGTGGTCAAGCGGGCGTTTTTGCTGGCCCAGGTCGACGGCCTGACCTACA
ACGAGATCGCCCGCGAATTGGGTATTTCATTGGCGACGGTCAAGCGTCATCTGAACAAGGCAGCGATGCGCTGCTACTTC
GCCTTGTGA

Protein sequence : 
MPPAHTVEVLYNAHKSWLNGWLRRRLGCPESAADLAQDTFVRVLTAHDPQPILEPRAFLTTIAKRVLFNHYRRQDLERAY
LDALAQLPEQVAPSEEERAIILQTLLELDQLLDGLPRVVKRAFLLAQVDGLTYNEIARELGISLATVKRHLNKAAMRCYF
AL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 6e-30 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSF113_4845 YP_005210229.1 ECF subfamily RNA polymerase sigma-70 factor VFG1049 Protein 3e-30 50