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Name : hrcC (PSF113_5594) Accession : YP_005210961.1 Strain : Pseudomonas fluorescens F113 Genome accession: NC_016830 Putative virulence/resistance : Virulence Product : protein HrcC Function : - COG functional category : - COG ID : - EC number : - Position : 6459857 - 6462007 bp Length : 2151 bp Strand : + Note : Type III secretion outermembrane pore forming protein (YscC,MxiD,HrcC, InvG) DNA sequence : ATGCCTAACAGGTGGCTTGCACCGTACCGCTTGATGACCGCAGGCAAGGTACACCTTCGCCAGTGGATCCCACGCCGCTG GGCGAAGCCTTCGCTGATCGCACTGGCATTGGCCGGCGCGCTTGGCGCTGGCATGCCGGCACAGGCGGCCATACCGACCG ACTGGAAGAACACGCCTTACGCCTATGACGCCCAGAGCACACCGCTGGCCAAGGTACTCGGAGACTTTGCCAATACCTTC GCAGTGCAACTGGTGATCGACGGTACGGTGAAAGGCACCGTCGACGGGCGGATGCGTGCCGAAAGTCCCCAGGCGTTCCT CGACAGGCTCGGCCTGGAAAATCGCTTCCAGTGGTTCATGTACGGCAACACGTTGTACGTCAGCCCCTTGCAGAACCAGG ACTCCACGCGCCTGGAGGTGTCCGCCGATGCCGTACCGGACATGAAGCAGGCCTTGACCGACATCGGCCTGCTGGATCCG CGTTTCGGCTGGGGTGAATTGCCCGATGAAGGCGTGGTCCTGGTCTCCGGCCCGGAGCGCTATGTGCGCTTGGTGACGCA GTTTGCCGAAGCACGCAAGACCCCCGAGGAAAAGCAGGAAGTGATCAGTTTCCCGCTGCGCTATGCCACCGCCGCCGACC GCAACGTCAAATACCGCGGCGAAACACTGGTCATTCCCGGGGTCGCCAGCATCCTGAAAGGTTTGCTGGAAAGTCGCAGC GCCGTGTCCGGGGGCATGCAAACGGCCTCGCCCCAGGCATCGTTCCAGAACATGCAGACCCAGCAATCCACGACCATGGG CAACATCGAGCAGTTGGCACTCAACGGCATGGGGCGTCCGAACACCAGCCGTGTACCGTCCGGCGCGAACAGCGGTGCAG GCGCTCGAGGCAAGATCCGCGTCGAAGCCGACGTGCGCAACAACGCGGTGCTCATCTACGACGCGCCCAAGCGACGGGAA ATCTACACGCCGCTGATTCGCGATGTGGACGTGCCGCGCAAGCTGGTGGAAATCGATGCGATCATCCTCGACATCGACCG CACGCAACTGGCCGAGCTGGCCTCGAACTGGAACGTCGAGAGCGGCGATCTGATCGGTGGCGCGTCGATGATTCGTCCCG GCGCCAGCTCGACGGTGTTCATTCAGGACTACGGTGATTTTTCCGCGCAACTGCGGGCCCTGGAGGGCCGTGGCCTGGCC TCGGTGGTGGCGAACCCATCGGTACTGACCCTGGAGAACCAGCCGGCGGTCATCGACTTCAGCCGGACCGAGTACATCTC GGCCATCGGCGAGCGCGTAGCCACCGTCGAGCCCATCACGGCAGGCACCAGTTTGCAGGTCGTGCCCCATGCCATCGAGA CCGGGGGCCGCAACCAGATCCAGATGTCCCTGGACATCGAGGACGGCCGCATCGAACCCTCGGAAGTTGGCCAGCAGACA CCCAGCGTGCGCCGGGGCGTGGTCAGCACTCAGGCTGTCATGGGGGAAAGCCGGTCATTGGTGGTCGGCGGTTTTCATAC CGAAGAGACCGGCGACAACCTCGAACGGGTGCCCTGGCTGGGTCGCATCCCACTGATCGGGCCGCTGCTGTTTTCTTCGA CCACGCGCGAAACCAGTCGCCGCGAACGGGTGTTCATCCTGACGCCTCGCCTGATCGGTGACCAGGTCGACCCGGCCCGC TACATCTCCGCCCTTGACCGCGAACAGGTCGACAGCGCCATGGCCCGCCTGGAAGAGCGTCGCAACGGCACCCGCCCCGT CGGTCGTATCGAGGTCAGCGACGTGCTCGCCCAACTCGCCGACGGCAACATTCCGGGCACGTTCAAGCAAGCGGCGTCGA TTCCTTATTCGCCCGACACATTGTGCGCGTTGCAACCCGGGTTATCGCTGGACGCCGCACGGGCCCAATGGTTCGCCGGC CCCGATTACGGCATCGCCGTGGGCGTGGTGCGCAACGACGGCCAGCGGCGGTTGCGCTTCGACGAGGCGAGCTGCGGCAG CCGCTGGGCCCTGGCCACCTCCGCCTGGCCGAAGGTGTGGCTTGAGCCCGGCGAAGAAACGGAAGTGTTCGTGGTCATGA AACAACCCACACGCACGCCAGGCGGCGAGCGCCCTTCTCTTCTGCAAACCAGCGCGAGGACCCTGCCATGA Protein sequence : MPNRWLAPYRLMTAGKVHLRQWIPRRWAKPSLIALALAGALGAGMPAQAAIPTDWKNTPYAYDAQSTPLAKVLGDFANTF AVQLVIDGTVKGTVDGRMRAESPQAFLDRLGLENRFQWFMYGNTLYVSPLQNQDSTRLEVSADAVPDMKQALTDIGLLDP RFGWGELPDEGVVLVSGPERYVRLVTQFAEARKTPEEKQEVISFPLRYATAADRNVKYRGETLVIPGVASILKGLLESRS AVSGGMQTASPQASFQNMQTQQSTTMGNIEQLALNGMGRPNTSRVPSGANSGAGARGKIRVEADVRNNAVLIYDAPKRRE IYTPLIRDVDVPRKLVEIDAIILDIDRTQLAELASNWNVESGDLIGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLA SVVANPSVLTLENQPAVIDFSRTEYISAIGERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLDIEDGRIEPSEVGQQT PSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIGPLLFSSTTRETSRRERVFILTPRLIGDQVDPAR YISALDREQVDSAMARLEERRNGTRPVGRIEVSDVLAQLADGNIPGTFKQAASIPYSPDTLCALQPGLSLDAARAQWFAG PDYGIAVGVVRNDGQRRLRFDEASCGSRWALATSAWPKVWLEPGEETEVFVVMKQPTRTPGGERPSLLQTSARTLP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcC | ABA47303.1 | HrcC | Virulence | S-PAI | Protein | 2e-158 | 52 |
| hrcC | AAT96274.1 | HrcC | Virulence | S-PAI | Protein | 5e-154 | 52 |
| hrcC | AAT96315.1 | HrcC | Virulence | S-PAI | Protein | 2e-154 | 52 |
| hrcC | AAT96206.1 | HrcC | Virulence | T-PAI | Protein | 4e-166 | 51 |
| hrcC | AAB05085.2 | HrcC | Virulence | Hrp PAI | Protein | 2e-169 | 51 |
| hrcC | AAT96354.1 | HrcC | Virulence | S-PAI | Protein | 7e-155 | 51 |
| hrcC | AAT96152.1 | HrcC | Virulence | T-PAI | Protein | 1e-165 | 50 |
| hrcC | NP_791216.2 | outer-membrane type III secretion protein HrcC | Virulence | Hrp PAI | Protein | 3e-167 | 50 |
| hrcC | AAB49179.1 | HrcC | Virulence | Hrp PAI | Protein | 4e-153 | 49 |
| hrcC | AAC34756.1 | HrcC | Virulence | Hrp PAI | Protein | 7e-159 | 49 |
