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Name : rpoB (TPESAMD_0241) Accession : YP_005221352.1 Strain : Treponema pallidum SamoaD Genome accession: NC_016842 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 246353 - 249889 bp Length : 3537 bp Strand : + Note : - DNA sequence : ATGTCAGCACGAGTTTGCAAAACACACAGAGTGTACGTGGGAAAGGATGTCAGGAATTTTATGGACATCCCGGATCTCAT CGAAATCCAGCTTCGATCTTACGACACCTTTCTGCATGGGGCCCGGAATACACCGTCCGGCGCCGACACCCTTATCTCCG GTACTAGAGAGGAGCTCGGCCTCGAAGACGTGTTCAAGACTACCTTTCCTATCGAGAGCTCTACGGGGGACATGACGCTC GAGTACCAATCATACTCCCTTGATGAGAAAAACATCAAGTTCTCCGAGGCGGAGTGTAAACAAAAGGGTTTGACGTACGC CATTCCGCTGAAGGCGCTTGTTGATTTACGTTTCAATAATACGGGGGAGATTAGGCGCAAAGACATTTATATGGGAGATA TCCCCAAGATGACTGAACGCGGCACCTTTATCATCAACGGTGCGGAGCGTGTGGTGGTATCCCAGATCCATCGTTCCCCT GGTGTTGTCTTTTCTCATGAGAAGGACAAGGAAGGACGGGAGGTATTCTCCAGCCGCATTATTCCGTACCGGGGAAGCTG GCTTGAATTTGAAATTGATCAGAAAAAAGATCTCATCTATGCAAAGCTTGATAAAAAGAGACGTATCCTAGGCACCGTGT TTTTGCGTGCGTTGCACTACGAAACGCGTGAGCAGATCATCGAGGCCTTTTACGCCATAGAAAAGACGCCTGTTTGTCAG GATCGTGTGGAGTACGAGCTGCTCACAGGTAAGATCCTAGCACGATCGGTGACGGTGGAAAATGAGCAGGGTGAAACCCG GGTGTTGTACAAAGCAGGAGAGAAAATCCATCCCCATGTCATCGATGATCTGCTGCAAAACGGCATATGTGAGGTCTACA TTATTAACCTTGAAGCGGAAGGTTCGTTGCGTTCTGCGGTCGTTATCAATTGTCTTGAACGAGAGGAAATGAAGTTCTCT AAGTCGGGTGCACAGGACGAGCTTTCGCGTGAAGAGGCACTGTGTATTGTATACTCAGCGCTAAGACCAAGCGATCCTAT GACCATGGACGCGGCGGAAAAAGATTTGCAGACAATGTTTTTCTCCCCACGTCGCTATGATTTAGGGCGGGTGGGGCGCT ACAAGCTGAACAAGAAATTTCGCTCTGACTCGCCGACTACTGAGTGCACGCTCACCCTCGATGATATCGTAAATACCATG AAATTTCTCATCAGAATGTATAGCGGTGATGCACAGGAAGATGATATCGATCACCTGGGCAACCGTCGTATTCGTTCGGT GGGGGAATTAATGACCAATACGTTAAAAACGGCCTTTTTGCGCATGGAACGTATTGCGAAGGAGCGTATGAGTTCTAAGG AAACGGAAACGATCAAGCCGCAGGATCTCATTTCCATAAAACCTATCATGGCTGCGATTAAGGAGTTCTTTGGTGCAAGT CAGCTTTCTCAGTTCATGGATCAGGTCAATCCGCTGGCGGAGTTGACACACAAGCGGCGTTTGAACGCACTTGGTCCTGG TGGACTTTCAAGGGAGCGTGCTGGGTTTGAGGTACGCGATGTGCACTACACGCACTACGGTCGGATGTGTCCCATTGAGA CCCCCGAAGGACCAAATATCGGTTTAATTGTTTCTATGGCCAATTACGCACGCGTTAACGGGTATGGGTTCTTGGAGGTG CCGTATGTACGGGTGCGTGACGGAGTTGTTACGAAAGAGATTGAGTACCTGGATGCTATGGACGAGGATCGCTACTACAT TGGGCAGGATTCTACGGCGGTAGGACCGGACGGGGTCATCCGTGTAGATCATGTCTCTTGTCGGCACCGGGGGGATTACA GTACGCGTAGTCCTAAGGATATCCAGTATATGGATGTTTCCCCCAAGCAGATAATTTCTGTTTCTGCTTCTCTCATACCG TTTCTTGAGCATGATGATGCTAACCGTGCGTTAATGGGGTCGAACATGCAACGGCAGGGAGTGCCGCTTATTTTTCCTGA ACCCCCGCGCGTGGGTACAGGCATGGAAGAGAAGTGTGCATATGACTCTGGAGTGCTGGTGAAGGCAAAGCAAGACGGAA CGGTTGCCTACGTTTCCTCAGAGAAGATAGTGGTTTGTTCCGCCGCGGCGTCTGGGGAAGAGCAGGAGGTCGTGTATCCG TTACTTAAGTATCAGCGGACAAATCAGGATACCTGTTACCACCAGCGGCCAATAGTGCACGTGGGAGATCGGGTACAGGT AGGAGATGCGCTTGCAGACGGTCCTGCAACGTATCGAGGGGAGCTTGCGCTTGGCAGAAACATTCTAGTTGGTTTTGTGC CGTGGAACGGTTACAACTACGAGGATGCCATTTTGATTTCTCACCGGGTGGTAAAGGAGGATATGTTCACCTCGGTTCAC ATCAAAGAATTTTCTACTGAGGTGCGTGAAACCAAGCTGGGTTCTGAACGAATGACGAATGATATCCCGAATAAGTCTGA GAAGAATCTGGATAATTTGGATGCAGAGGGGATCATTCGTATTGGGTCAAAGGTGCGTGCGGGAGACGTGCTTATCGGAA AGATTACGCCAAAAAGCGAGTCTGAGACGACGCCAGAGTTTAGGCTGCTGAATTCTATTTTTGGGGAGAAGGCGAAGGAA GTGCGTGATTCTTCTCTACGTGTGCCGCATGGAGTTGAGGGTACAGTCATTGACGTGCAGCGACTCAGGCGTTCGGAGGG AGATGATTTAAACCCCGGGGTGTCAGAGGTGGTGAAGGTTCTTATCGCTACCAAGCGTAAGCTGCGTGAAGGGGATAAAA TGGCCGGTCGCCACGGTAACAAGGGTATCGTTGCGCGCATCCTTCCTGAAGAAGACATGCCGTATCTGGATGATGGTACC CCGCTTGATGTCTGTTTGAACCCGCTCGGTGTACCTTCTCGTATGAACATAGGACAGATTCTTGAATCTGAATTGGGACT TGCGGGGTTGCGGCTTGACGAATGGTATGAGTCTCCTGTCTTTCAATCTCCAAGCAACGAGCAGATTGGGGAAAAGTTGA TGCAGGCAGGTTTTCCGACTAATTCAAAAGTGATGCTGCGTGACGGACGCACGGGGGATTATTTTCAAAACCCTGTATTT GTGGGGGTTATTTACTTTATGAAGCTTGCGCATCTAGTGGATGACAAAATGCACGCCCGCTCTACAGGTCCATATTCGCT TGTGACGCAGCAACCCTTAGGGGGTAAAGCGCAGTTTGGAGGGCAGCGTCTCGGGGAAATGGAGGTGTGGGCGCTTGAAG CCTACGGCGCGGCGAATACCCTGCAGGAGTTGCTAACGATTAAATCGGATGATATGCACGGGCGTTCTAAAATTTATGAG GCAATTGTAAAAGGGGAGGCTTCGTCTCCTACCGGTATTCCTGAATCTTTTAACGTGTTGGTGCAGGAGCTGCGGGGACT TGCGCTCGACTTTACGATTTACGATGCGAAGGGCAAGCAGATTCCGCTCACTGAGCGCGATGAAGAAATGACGAATAAGA TTGGCTCTAAATTTTAA Protein sequence : MSARVCKTHRVYVGKDVRNFMDIPDLIEIQLRSYDTFLHGARNTPSGADTLISGTREELGLEDVFKTTFPIESSTGDMTL EYQSYSLDEKNIKFSEAECKQKGLTYAIPLKALVDLRFNNTGEIRRKDIYMGDIPKMTERGTFIINGAERVVVSQIHRSP GVVFSHEKDKEGREVFSSRIIPYRGSWLEFEIDQKKDLIYAKLDKKRRILGTVFLRALHYETREQIIEAFYAIEKTPVCQ DRVEYELLTGKILARSVTVENEQGETRVLYKAGEKIHPHVIDDLLQNGICEVYIINLEAEGSLRSAVVINCLEREEMKFS KSGAQDELSREEALCIVYSALRPSDPMTMDAAEKDLQTMFFSPRRYDLGRVGRYKLNKKFRSDSPTTECTLTLDDIVNTM KFLIRMYSGDAQEDDIDHLGNRRIRSVGELMTNTLKTAFLRMERIAKERMSSKETETIKPQDLISIKPIMAAIKEFFGAS QLSQFMDQVNPLAELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANYARVNGYGFLEV PYVRVRDGVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVIRVDHVSCRHRGDYSTRSPKDIQYMDVSPKQIISVSASLIP FLEHDDANRALMGSNMQRQGVPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQEVVYP LLKYQRTNQDTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNYEDAILISHRVVKEDMFTSVH IKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIRIGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAKE VRDSSLRVPHGVEGTVIDVQRLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGT PLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPVFQSPSNEQIGEKLMQAGFPTNSKVMLRDGRTGDYFQNPVF VGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANTLQELLTIKSDDMHGRSKIYE AIVKGEASSPTGIPESFNVLVQELRGLALDFTIYDAKGKQIPLTERDEEMTNKIGSKF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 46 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 53 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 47 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 47 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 47 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 47 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 47 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 46 |
| rpoB | YP_005221352.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 45 |
