|
Name : STMMW_41061 (STMMW_41061) Accession : YP_005235110.1 Strain : Salmonella enterica D23580 Genome accession: NC_016854 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase, beta-subunit Function : - COG functional category : - COG ID : - EC number : - Position : 4388659 - 4392687 bp Length : 4029 bp Strand : + Note : pfam_scan;Pfam:PF04560; E()=7.4E-34;score=115.1;query 1266-1341;description=RNA_pol_Rpb2_7; pfam_scan;Pfam:PF04565; E()=5.2E-30;score=102.1;query 513-582;description=RNA_pol_Rpb2_3; pfam_scan;Pfam:PF00562; E()=3.1E-148;score=493.4;query 716-1264;descripti DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCACAAGTTCTGGATGTACCTTATCT CCTTTCTATCCAGCTTGACTCGTTTCAGAAGTTTATCGAGCAAGATCCTGAAGGGCAGTACGGCCTGGAAGCAGCCTTCC GTTCCGTGTTCCCGATTCAGAGCTACAGCGGTAATTCCGAGCTGCAGTACGTCAGCTACCGCCTTGGCGAACCGGTGTTT GACGTTCAGGAATGTCAGATCCGTGGCGTGACCTATTCCGCACCGCTGCGCGTAAAACTGCGTCTGGTGATCTACGAGCG CGAAGCGCCGGAAGGCACCGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGCGAAATTCCGCTCATGACCGACAACG GTACCTTTGTTATCAACGGTACTGAGCGTGTTATCGTTTCTCAGCTGCACCGTAGCCCTGGCGTCTTCTTTGACTCCGAC AAAGGTAAAACCCACTCTTCGGGTAAAGTGCTGTATAACGCGCGCATCATTCCTTACCGTGGTTCCTGGCTGGACTTCGA ATTCGATCCGAAGGACAACCTGTTCGTACGTATCGACCGTCGCCGTAAACTGCCTGCGACCATCATCCTGCGTGCGCTGA ACTACACCACTGAGCAGATCCTTGACCTGTTCTTTGAGAAAGTCGTCTTCGAAATTCGCGACAACAAACTGCAGATGGAG CTGATTCCAGAACGTCTGCGTGGCGAAACCGCGTCGTTCGATATCGAAGCTAACGGCAAAGTGTACGTTGAAAAAGGCCG TCGCATTACCGCGCGTCACATCCGTCAGCTGGAAAAAGACGATATCAAGCATATCGAAGTTCCGGTTGAGTACATCGCAG GTAAAGTCGTCTCTAAAGACTACGTTGACGAATCTACTGGCGAGCTGATCTGCGCGGCGAACATGGAGCTGAGCCTGGAT CTGCTGGCTAAGCTGAGCCAGTCCGGCCACAAGCGTATCGAAACGCTGTTTACCAACGATCTGGACCACGGCCCGTACAT TTCTGAAACGGTACGCGTCGACCCAACTAACGATCGTCTGAGCGCGCTGGTAGAAATCTACCGCATGATGCGCCCTGGTG AGCCGCCGACACGCGAAGCGGCTGAAAGCCTGTTTGAGAACCTGTTCTTCTCCGAAGACCGCTATGACCTGTCTGCGGTG GGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGACGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGA TGTCATGAAGAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTGGATGATATCGACCACCTCGGCAACCGTCGTATCC GTTCCGTCGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTGCGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCT CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCGATTTCCGCCGCAGTGAAAGAGTTCTTTGG TTCCAGCCAGCTGTCTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCCGCACTCG GCCCAGGCGGTCTGACCCGCGAACGCGCAGGCTTCGAAGTTCGAGACGTACACCCGACGCACTACGGTCGCGTATGTCCT ATCGAAACGCCGGAAGGTCCGAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAATATGGCTTCCT TGAGACGCCGTACCGTCGTGTGGTTGATGGCGTGGTTACTGACGAAATTCATTACCTGTCTGCTATCGAAGAAGGCAACT ACGTTATCGCTCAGGCGAACTCCAACCTGGATGACGAAGGCCACTTTGTAGAAGATTTGGTGACCTGCCGTAGCAAAGGC GAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTTTCCACCCAGCAGGTGGTCTCCGTCGGTGCGTCCCT GATCCCGTTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCGGTTCCGACTCTGC GCGCTGACAAGCCGCTGGTGGGTACCGGTATGGAACGTGCTGTCGCCGTCGACTCCGGTGTTACTGCAGTAGCTAAACGT GGCGGTACTGTTCAGTACGTGGATGCGTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTACCCGGGCGAAGCGGG TATCGACATCTATAACCTGACCAAATACACCCGCTCTAACCAGAACACCTGTATCAACCAGATGCCATGTGTGTCTCTGG GCGAGCCGGTTGAACGCGGCGACGTGCTGGCAGACGGTCCGTCCACCGACCTCGGTGAACTGGCGCTCGGTCAGAACATG CGCGTGGCGTTCATGCCGTGGAACGGCTACAACTTCGAAGACTCCATTCTCGTTTCCGAGCGTGTTGTCCAGGAAGACCG TTTCACCACCATCCACATTCAGGAACTGGCGTGCGTGTCCCGTGACACCAAGCTGGGGCCGGAAGAGATCACCGCTGATA TCCCGAACGTGGGTGAAGCTGCGCTCTCCAAACTGGATGAATCCGGTATCGTTTACATCGGCGCGGAAGTGACAGGCGGT GACATTCTGGTCGGTAAGGTGACGCCGAAAGGTGAAACCCAGCTGACGCCGGAAGAGAAACTGCTGCGTGCGATCTTCGG TGAGAAAGCGTCTGACGTTAAAGACTCTTCTCTGCGCGTACCTAACGGTGTCTCCGGTACGGTTATCGACGTTCAGGTCT TTACTCGCGATGGCGTAGAAAAAGACAAACGTGCTCTGGAAATCGAAGAGATGCAGCTCAAGCAGGCGAAAAAAGACCTG TCTGAAGAACTGCAGATCCTCGAAGCGGGCCTGTTTAGCCGTATCCGTGCGGTGCTGGTTTCCAGCGGCGTTGAAGCTGA GAAGCTCGACAAACTGCCGCGCGACCGCTGGCTGGAACTCGGTCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAAC TGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAAAAACTTGAAGCGAAGCGCCGTAAAATCACCCAGGGCGAC GATCTGGCGCCGGGCGTGCTGAAGATCGTGAAGGTCTATCTGGCCGTTAAACGCCGTATCCAGCCGGGTGATAAGATGGC AGGTCGTCACGGTAACAAGGGTGTTATCTCTAAGATCAACCCGATCGAAGACATGCCTTACGATGAAAACGGCACGCCGG TAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGCCAGATTCTGGAAACCCACCTGGGTATGGCT GCGAAAGGTATTGGCGACAAGATTAACGCCATGCTGAAACAGCAGCAGGAAGTCGCGAAACTGCGCGAATTCATCCAGCG TGCCTACGATCTGGGCGCCGACGTTCGTCAGAAAGTCGACCTGAGCACCTTCAGCGATGATGAAGTGCTGCGTCTGGCAG AAAACCTGCGTAAAGGTATGCCGATTGCCACACCAGTGTTTGACGGTGCGAAAGAAGCGGAAATCAAAGAGCTGCTGAAA CTGGGCGACCTGCCGACCTCCGGTCAGATCACCCTGTTCGATGGCCGTACGGGTGAACAGTTCGAACGTCCGGTAACCGT CGGTTACATGTACATGCTGAAACTGAACCACCTGGTTGATGACAAGATGCATGCGCGTTCTACCGGTTCTTACAGCCTGG TTACTCAGCAGCCGCTGGGTGGTAAGGCGCAGTTCGGTGGTCAGCGCTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCT TACGGTGCCGCCTACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAATGGTCGTACCAAGATGTATAAGAA CATCGTGGACGGCAACCATCAGATGGAACCGGGTATGCCGGAATCCTTCAACGTTCTGTTGAAAGAGATCCGCTCGCTGG GCATCAACATCGAACTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME LIPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIRAVLVSSGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLK LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP001918.1.gene250.p | Protein | 0.0 | 99 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP000034.1.gene3741. | Protein | 0.0 | 99 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP001138.1.gene4362. | Protein | 0.0 | 99 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_002695.1.914942.p | Protein | 0.0 | 99 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP000647.1.gene4402. | Protein | 0.0 | 99 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP004022.1.gene2794. | Protein | 0.0 | 94 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_002516.2.881699.p | Protein | 0.0 | 74 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
| STMMW_41061 | YP_005235110.1 | DNA-directed RNA polymerase, beta-subunit | NC_011035.1.6448762. | Protein | 0.0 | 64 |
