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Name : rpoB (RPO_01030) Accession : YP_005287093.1 Strain : Rickettsia rickettsii Arizona Genome accession: NC_016909 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 181566 - 185687 bp Length : 4122 bp Strand : + Note : COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit DNA sequence : ATGGTTTCATTAAGGGATAATATAGAAGCACAACCCTTGTCACATAATAGAAGAATAAGAAAAAATTTCGGTCACATAAA TTTAGTAGCAGATATACCGAATTTGATTGAAATTCAAAAAAATTCATATGAGAAAAACTTTCTACAGTTAAATATTAAAG ATTCTGAAAGAAAAAACAAAGGTTTACAATCTATATTAAATTCAATTTTTCCTATTTCAGATTCCTCCAATGTTGCTAAT TTAGAATTTGTAAAATATGAATTCGATACTCCAAAATATGATGTAGAAGAGTGCAGTCAAAGAAGTTTAAGTTATGCTGC TCCTCTTAAAGTTACTTTAAGATTAAGTATTTGGGATATAGATGAGGATACCGGTACTAGAGAAATTAAAGGGATTAAAG AGCAAGAAGTATATATGGGTGATATCCCATTAATGACTAAAAACGGTACTTTTATTATCAACGGTACGGAAAGAGTAGTT GTATCACAAATGCATCGCTCACCTGGTGTATTCTTTTATCATGATGAAGGAAAAGTCCACTCTTCCGGCAAACTTTTATA TTCTGCTCGTGTTATTCCATATAGAGGGTCTTGGCTTGATTTAGAATTCGACGCTAAGGATGTTATTTATTTCAGGATTG ATAGAAAAAGAAAGCTTTATGCTACTACTTTGCTTAGAGCTATAGGTATGAGTACTGAAGAAATTATAAAATTTTATTAT AATTCAGTAACTTATAAGCTTGTTAAAAATAAAGGTTGGGCGGTTAAATTTATACCTCAGCATATTACTGCTCATCGTTT AACAAGTGATTTAGTAGATGCAGATACTGGAAATATTCTACTGAAAGCAGGACAAAAAATTACTCCGCGTTTGGCTAAAA AATATTTTGGGGAAGGGCTTAATAATATTTTAGTAGCTCATGAAACTTTAATCGGCAAATATCTATCCGAAGATTTAAGA GATCCTGCAAGCGATGAAGTATTAGCAAAAATCGGTGAAATGATTACTGCTGATATGCTAAATGTTATTAATGATCTTAA AATTAAAAATGTTAACGTATTAGTAATCAATCCTCAATCCGGTCCATATATAAGGAACACCTTATTTGCTGATAAAAATC AGGATCGTGAGGCAGCATTATGTGATATTTTCAGAGTTCTAAGACCAGGCGAACCTGCTAATATCGAAGCGGCTGAAAGC CTGTTTTATAATTTATTCTTTGATACGGAAAGATATGATCTTTCAGAAGTCGGGCGAATAAAAATGAATTCTAGGTTAGA GCTGAATATTTCTGAAGAAGTTACGGTTTTAACAATTGATGATATTAAAAATATCGTAAGAGTTTTAGTAGAGCTTAAAG ACGGTAAAGGTATCATAGATGATATTGATCATTTAGGTAATAGAAGGGTTAGATCAGTAGGTGAATTGATAGAAAATCAA TTTAGAATAGGTTTAGTCCGAATGGAAAAATCTGTAATTGAAAGGATGTCGGCAGGTGATGTTGATACCGTAATGCCTCA TGATTTAGTAAATTCTAAAATTTTAGTTTCAGTAGTAAAAGAATTTTTTAGTACCTCCCAATTATCCCAATTTATGGATC AAACAAATCCATTATCGGAAATAACTCATAAAAGAAGGCTATCGGCACTTGGTCCCGGGGGGCTTAGTCGAGATCGAGCA GGTTTTGAGGTGCGTGACGTACATCCGACTCATTACGGTCGTATTTGTCCTATTGAAACACCTGAAGGTCAGAATATCGG GTTAATTAACTCTATGGCTACTTATGCTAGAATAAATAAACATGGTTTTATAGAGAGTCCGTATAGAAGAGTTAAAGATG GATGTGTAACCGATGAAGTGGTATATCTTTCTGCTATTGAAGAAGGTAAATACAAAATCGGACAAGCAAATTCTAAAATT AATAAAGACGGAAAACTGCAAGGAGAGTTTATTAATTGCCGTGTTGAAGGCGGTAATTTTGTAATGGTAGAACCGTATGA GGTAGACTTCATTGATGTGACTCCTATGCAGGTAGTGTCGGTTGCGGCTTCTCTTATACCTTTCTTAGAAAACGATGATG CTAACCGTGCTTTGATGGGTTCAAACATGCAAAGACAAGCCGTTCCTTTAATTAAAACGGATGCACCTTTTGTAGGTACC GGAGTTGAAGGGGTAGTAGCTAAAGATTCCGGAGCGTCAGTGCTTGCATTACATGACGGTATTGTTGAGCAGGTAGATTC AAATAGAATCGTGATTAGAACTCTAGAACAAAAAGTTGACGGTTCTCCTTCGGTTGATATTTATAACTTACTAAAATTCC AAAAATCCAATCATAATACTTGTATAAATCAAAAGCCTTTAGTTAAGGTCGGTCATTACGTTAAGAAAAACGATATTATA GCTGACGGTCCTAGTACGGATAACGGTGAAATTGCTTTAGGTCGAAACGTGCTTGTGGCTTTCTTACCTTGGAACGGTTA TAATTTTGAAGATTCCATTTTAATATCCGAACGTATAGTAAAAGAGGATGTATTTACATCTATTCATATTGAAGAGTTTG AAGTAATAGCTAGAGATACACGCCTTGGTCCTGAAGAAATTACCCGTGATATACCGAATGTAAGTGAAGAAGCGTTGCGT CATCTTGATGAGGTCGGAATAATTTATATAGGTGCAGAAGTAAAAGCCGGTGATATTTTAGTTGGAAAAGTAACACCAAA AAGTGAATCGCCTATTACTCCTGAAGAGAAGCTACTACGTGCTATTTTCGGGGAAAAAGCTTTTGACGTAAAAGATTCAT CGCTGCATGTACCTTCCGGAGTGAGCGGAACTGTAGTAGAAGTAAGGGTATTTTCTCGTAGAGGTGTAGAAAAAGACCAG CGAGCTATTGCTATTGAAAAACAACAAATTGAAAAATTCGCAAAAGACAGAGACGATGAATTAGAAATTATTGAGCATTT TGTGTTTAGTTGGCTTGAAAAGCTTTTAGTAGGGCAGGTGATTATTAACGGTCCTAAGCAAGTAAAAGTAGGACAAACTA TTACTACTGAAATGCTAAAAGGCTTATCTAAAGGGCAATTTTGGCAGATTACCGTGGAAGATGCAAATGTAATGAATGAA ATAGAGCAGATAAAGACTCATTATGATGAGAAAAAAGAGGCTCTTGATAAAAGATTTGCTACTAAGGTAGAGAAATTGCA AAGTGGTGATGATTTACCTCAGGGAGCTTTAAAAGTAGTAAAAGTATTTATTGCAACTAAGCATAAATTACAACCCGGGG ATAAAATGGCAGGAAGACACGGAAATAAAGGTGTTATTTCACGTATCGTACCTGAAGAAGATATGCCGTTTTTAGAAGAT GGAACTGTTGTAGATATCGTTCTTAACCCTCTAGGTCTTCCGTCCCGTATGAATATAGGACAGATTTTAGAAACGCATCT TGGGTGGGCATCAATAAATTTAGCAAAAAAAATATCTACCTTAGTAAAGGAATATAAAAATAAACATATAGGTATTGAGC AGATTAAGAAATTCTTAATTGAACTGTATGGAGAAAATATTAATTCTATACTTGAAAGACCGGAAGAAGAGATTATCGCT TTTTGTAAGAAAGTAAGTAAAGGCGTACATTTTGCAACTCCTGTATTTGACGGAGCAAAAGTTCAGGACGTTAAAGATAT GCTAAAGCTTGCCGGTCAAGACCCTTCAGGACAAGTGAAATTAATTGACGGTAGAACCGGTGAATATTTTGACCGTCTAG TAACCGTAGGACAGAAATATTTGCTGAAATTGCATCATTTAGTCGATAATAAAATTCACTCCCGTTCTATAGGACCTTAT AGTTTAGTAACGCAGCAACCGCTTGGAGGTAAGTCTCATTTCGGCGGACAGCGTTTCGGAGAAATGGAATGCTGGGCATT ACAAGCTTACGGTGCAGCTTATACGTTACAGGAAATGTTAACGGTTAAGTCGGATGACGTAAACGGTAGGATCAAAACTT ATGATTCTATAGTACGTGGTGAAAATAATTTTGAATCAGGCATTCCTGAATCATTTAATGTTATGATAAAAGAATTTAGA TCTTTATGTCTTAACGTAAAGCTTGAAGTAACTTCAAGTTAA Protein sequence : MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNKGLQSILNSIFPISDSSNVAN LEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVV VSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGLNNILVAHETLIGKYLSEDLR DPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQSGPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAES LFYNLFFDTERYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRDRA GFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINKHGFIESPYRRVKDGCVTDEVVYLSAIEEGKYKIGQANSKI NKDGKLQGEFINCRVEGGNFVMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKNDII ADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALR HLDEVGIIYIGAEVKAGDILVGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ RAIAIEKQQIEKFAKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLKGLSKGQFWQITVEDANVMNE IEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLED GTVVDIVLNPLGLPSRMNIGQILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEEIIA FCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKYLLKLHHLVDNKIHSRSIGPY SLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFR SLCLNVKLEVTSS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 55 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 55 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 56 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 56 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 54 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 54 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 54 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 54 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 54 |
| rpoB | YP_005287093.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 0.0 | 46 |
