|
Name : lysS (SGRA_1494) Accession : YP_005321813.1 Strain : Saprospira grandis Lewin Genome accession: NC_016940 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 1510880 - 1512517 bp Length : 1638 bp Strand : - Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGGCTTTAACGGAACAAGCTAGCCAAGCCTGGCTAGAAGAGCTCGACCAATTGCTGGAGGCTGGCCAATTAGGCGGCCG CAAGCTCAATGAAATGGAGCGACAGCGCATCACCAATTTGAGAAAAATGGTGGAACTCAAGATTAACCCTTATCCCGCCG AGGCCTTTGAGGTCAGCCACCTGGCCAAAGAGGTAAGCGAAAACTTTAGCGAGGAAAAGGCCGAGGACTTTAAAAAGGTC CGCCTAAGCGGCCGCCTAATGTCTAAACGGGTAATGGGAAAGGCTAGCTTTGCCGAACTCCAAGACAGCAGCGGACGTAT TCAGTTTTATATTAGCCGCGACGAAGTTTGCCCTGAAGACAATAAAGATCTCTATAATAAGGTCTTTAAAAAATTGCTCG ATATTGGCGATTATGTGGGCATTGAGGGCTATGCTTTTTATACCAAAACGGGTACCCTTTCTATTCATGTAGAAGAGTTT ACCTTTTTGGGCAAGGCCATCCGCAACCTGCCTATCGTAAAAACGGATAATGAAGGCAATGTACATGATGCTTTTACCGA TGCCGAACAGCGCTATCGGATGCGTTATGTGGACCTTACCGTTAATCCACAATACAAAGAGATTTTCTTGACCCGCTCTA AGGTGGTTCGTGAAATGCGCCATTTCTTTGATGCTCAAGGCTGGTTGGAAGTAGAAACGCCCATTTTGCAAGCTGTGCAT GGTGGTGCCGCCGCTCGTCCTTTTGAGACGCATCACAATACCTTGGATGAGGATCTCTATTTGCGTATTGCCAATGAACT TTATCTCAAGCGCCTCATTGTGGCTGGCTTTGATGGAGTTTATGAAATCGGCAAAATGTTCCGCAATGAAGGGATGGACC GGACCCACAACCCCGAGTTTACCTCTATGGAGATTTATGTGGCCTATAAGGACTACATTTGGATGATGCAGATGGTGGAG CAACTCTTTGAGAAAATCTGCCTTGCTGTTCATGGTAGCAGCAGCATTAAGATCCGTAAGCAGCATGGCAAAGAATTTAC TACACATGAAGTAAATTTTGCTGGACCATTTGAGAAGCTCAGCATTTATGATGCAATTGAGAAGCATAGTGGCCATAACC TACGCAATATGAGCGAAACGGAAATCTTTGCCCTTTGTAAGGAACTACATATTGATGTAGATGCCAGCATGGGCCGCGCT AAACTCATTGATGAGGTCTTTGGCGAAACCACCGAGCCCCATCTTATTCAGCCTACCTTCATCACCGATTATCCAATCGA GATGACCCCTTTGGCCAAAAAACACCGCAGTGAAGAGGGACTCGTCGAGCGCTTCGAGCTCTTTGTCATGGGCAAAGAAA TTGCCAATGCCTACACCGAGTTGAATGATCCTATCGATCAGCGCCGCCGCTTTGAGGACCAACTTCGCCTAGCCGAAAGA GGAGACGAAGAAGCCATGGCCATGGATGAGGACTTCCTCCGTGCCCTAGAATACGGTATGCCTCCTTGTTCTGGTTTGGG TATTGGTATCGACCGCCTAGTGATGTTGATGACCGACCAAACCTCTATTCAAGAAGTGCTCTTCTTCCCACAAATGCGTG CGATCAAGAAGAAAACAGAAGGACAAGAAGAAGCTTAG Protein sequence : MALTEQASQAWLEELDQLLEAGQLGGRKLNEMERQRITNLRKMVELKINPYPAEAFEVSHLAKEVSENFSEEKAEDFKKV RLSGRLMSKRVMGKASFAELQDSSGRIQFYISRDEVCPEDNKDLYNKVFKKLLDIGDYVGIEGYAFYTKTGTLSIHVEEF TFLGKAIRNLPIVKTDNEGNVHDAFTDAEQRYRMRYVDLTVNPQYKEIFLTRSKVVREMRHFFDAQGWLEVETPILQAVH GGAAARPFETHHNTLDEDLYLRIANELYLKRLIVAGFDGVYEIGKMFRNEGMDRTHNPEFTSMEIYVAYKDYIWMMQMVE QLFEKICLAVHGSSSIKIRKQHGKEFTTHEVNFAGPFEKLSIYDAIEKHSGHNLRNMSETEIFALCKELHIDVDASMGRA KLIDEVFGETTEPHLIQPTFITDYPIEMTPLAKKHRSEEGLVERFELFVMGKEIANAYTELNDPIDQRRRFEDQLRLAER GDEEAMAMDEDFLRALEYGMPPCSGLGIGIDRLVMLMTDQTSIQEVLFFPQMRAIKKKTEGQEEA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-93 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005321813.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-93 | 43 |
