Gene Information

Name : O3Y_06720 (O3Y_06720)
Accession : YP_005333210.1
Strain :
Genome accession: NC_016944
Putative virulence/resistance : Virulence
Product : ATP-binding cassette, subfamily B, bacterial RtxE
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1540260 - 1542425 bp
Length : 2166 bp
Strand : -
Note : COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

DNA sequence :
ATGAACACCCGTTTTACAACCGACGCTCATAGGCTTGCTGAACAAACGTTACCACAAGAGTCTCCAAGAACTAATTGGGG
TATCGAAGCTGTGGTCTACGCAGGTCAGCAATTTCACAAAAAATCGACCAGCTCGCAACTGAAACACGCGCTAGGGGTAA
GCTACGCCAATCTCACTGACATGGAAATGAGAGAGGCCGCCGACTATCTTGGCCTGAAAAGCCAAATAACAAAGCTTAGT
ATTCAAGCGTTCAATACGCTGCCACTCCCCGCTCTTATCGAATATCAGGGTGGCTGGAAAGTGATGATTCAAACCGATGA
TAACGGTTGGACGGCCTACGATCCTGCAACCGACTCTCTGCACACACTCTCGTTCACATCGGCTGAATCCACCGCGCATT
ACAAAGTCATGCTGATTGCGGATGAGTCTCTGAGCGTCAAAGAGGTCAAATTTGGTTTAAGCTGGTTCGCCCCTTCCATT
CTTCGCCAAAAAAGCCAACTGCGAGATGTGTTTCTTTACGCCATCGCGCTACAGATATTTGCGCTGGTTAGCCCGATGCT
GTTTGAAAATGTTATCGATAAAGTGCTCGTGGGACGAAGCCTATCAAGCTTGCATGTGCTGGCGCTGGCGATGTTAGCGT
TAGCGATAGCTGAGCCAGCATACAGCTATTTACGCAATACCGTATTTGGCCATCTTGCAAGCCAAGTGAATGCAGAGCTG
TCAGGCCGACTCTATCGGCACTTAGTCGGTCTGCCATTAACCTATTTCAAGCAGCGCCAAACTGGGCAAATCATTGCGCG
AGTGCGTGAAATGGCGCAAATCCGTCAGTTTCTGACGGGTTCAACTTTGATGCTATTACTTGATCTGATTTTTGTGACGG
TTTTTCTCGCTGTCATGTTCCATTACGCCAGTACACTGACTTGGTTAGTGATTGGCTCGCTTGTGATTTATTTTGTGTTG
TGGCTGATTGCAGGACCGCTGATCCGCAAAAAAGTGGAATCTGAATACGAGTCCGACGCTAATGCCACGACGTTTTTGAC
CGAAGCCGTTACTGGTATTGAAACCATCAAAACGACCGCGACGGAGCATCGCTTTCTTGAGCAGTGGCAACGTATTCTTA
GCCAGCAACTAAACCGTAGCTTTGATGCACAAAAATCGGGGCTCATCGCTGGGCAAGCTATCGCTCTGGTGCAGAAGCTG
ACTGCGGCACTGCTGCTTTGGTGGGGCGTGAGCGCGGTACTCAAAGGTGAAATCACTCCCGGTCAGCTAGTGGCCTTCAA
TATGCTCGCAGGCCATGTGACTCAGCCCGTTCTGCGACTGGCACAAATTTGGCAGGATTTTCAGCACACTCTTATCGCAC
TGAGAAGGGTTGGCGATATTCTCGATGAACCGAGAGAAAACAGTAAACAAGGCTTAGCGTCCGTGCCCGAACTCGACGGT
GGCATTGAGTTTAGTAACATTCGCTTTCGTTACCACCAAGATGCCCCTGAGGTACTGGCCAATCTATCACTCAAGATCAA
ACCGGGGCAATTTATCGGCGTTACTGGACCATCAGGTTCAGGCAAAAGCACACTCACTCGCCTGTTGCAACGCTTGTACG
TTCCGCAACATGGCCAAGTGCTGGTGGATGGAATGGATCTTGCGATTGCGGATCCCGTGTCTCTGCGCCGCAATATGAGT
GTGGTACTACAAGAGAGCATTCTTTTTTCCGGAAGTGTGGCGGACAATATTCGTTTATGTAAACCGCAGGCCAGCGATGA
AGAAATCCGTCATGCCGCTCAATTAGCAGGTGCGTTAGCATTTATTGAAGGACTTCCCCACGGCTTTAACCAACCGGTTG
GGGAAAAAGGTGCAGCGCTTTCGGGAGGTCAAAGGCAACGTATCGCCTTAGCGAGAGCCTTGCTGGTCAATCCTAGAATC
TTACTGCTGGATGAAGCGACCTCTGCTCTCGACTACAATTCTGAAGCGTCAATCATGAGCAATATGGATGAAATATGTCG
TGGTCGCACTGTGATCAGTATTGCCCATCGCCTCAATACCATCCGCCATGCTGACAACATCTTTGTCTTGGATAAAGGAC
AAGTCGCCGAAAGCGGTACACATGAAGAACTGCTTGCCCAGCAAGGGCTGTACGCCAAACTTTGGACGCAACAAGTGGGA
GAATAG

Protein sequence :
MNTRFTTDAHRLAEQTLPQESPRTNWGIEAVVYAGQQFHKKSTSSQLKHALGVSYANLTDMEMREAADYLGLKSQITKLS
IQAFNTLPLPALIEYQGGWKVMIQTDDNGWTAYDPATDSLHTLSFTSAESTAHYKVMLIADESLSVKEVKFGLSWFAPSI
LRQKSQLRDVFLYAIALQIFALVSPMLFENVIDKVLVGRSLSSLHVLALAMLALAIAEPAYSYLRNTVFGHLASQVNAEL
SGRLYRHLVGLPLTYFKQRQTGQIIARVREMAQIRQFLTGSTLMLLLDLIFVTVFLAVMFHYASTLTWLVIGSLVIYFVL
WLIAGPLIRKKVESEYESDANATTFLTEAVTGIETIKTTATEHRFLEQWQRILSQQLNRSFDAQKSGLIAGQAIALVQKL
TAALLLWWGVSAVLKGEITPGQLVAFNMLAGHVTQPVLRLAQIWQDFQHTLIALRRVGDILDEPRENSKQGLASVPELDG
GIEFSNIRFRYHQDAPEVLANLSLKIKPGQFIGVTGPSGSGKSTLTRLLQRLYVPQHGQVLVDGMDLAIADPVSLRRNMS
VVLQESILFSGSVADNIRLCKPQASDEEIRHAAQLAGALAFIEGLPHGFNQPVGEKGAALSGGQRQRIALARALLVNPRI
LLLDEATSALDYNSEASIMSNMDEICRGRTVISIAHRLNTIRHADNIFVLDKGQVAESGTHEELLAQQGLYAKLWTQQVG
E

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hlyB NP_755448.1 hemolysin B Virulence PAI I CFT073 Protein 1e-128 45
hlyB CAD33760.1 hemolysin B Virulence PAI I 536 Protein 6e-129 45
hlyB CAD42038.1 HlyB protein Virulence PAI II 536 Protein 6e-129 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
O3Y_06720 YP_005333210.1 ATP-binding cassette, subfamily B, bacterial RtxE VFG1269 Protein 6e-131 48
O3Y_06720 YP_005333210.1 ATP-binding cassette, subfamily B, bacterial RtxE VFG1501 Protein 4e-129 45
O3Y_06720 YP_005333210.1 ATP-binding cassette, subfamily B, bacterial RtxE VFG0907 Protein 5e-129 45
O3Y_06720 YP_005333210.1 ATP-binding cassette, subfamily B, bacterial RtxE VFG1557 Protein 4e-129 45
O3Y_06720 YP_005333210.1 ATP-binding cassette, subfamily B, bacterial RtxE VFG0841 Protein 4e-127 45