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Name : Fraau_0646 (Fraau_0646) Accession : YP_005376801.1 Strain : Frateuria aurantia DSM 6220 Genome accession: NC_017033 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : - COG ID : - EC number : - Position : 714657 - 718820 bp Length : 4164 bp Strand : + Note : PFAM: RNA polymerase Rpb2, domain 3; RNA polymerase Rpb2, domain 6; RNA polymerase beta subunit external 1 domain; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 2; RNA polymerase Rpb2, domain 7; TIGRFAM: DNA-directed RNA polymerase, beta subuni DNA sequence : ATGACCTACTCGTTTACCGAGAAGAAGCGCATCCGCAAGGATTTTGGCAAGCGTCCCCCTGTTCTGGGCGTGCCCAACCT GCTGACCATCCAGACCGACTCGTACAAGGAATTCCTGCAGGAAGACGTTTCTCCCAAGAAGCGTGCCGAGCGGGGCCTGA ATGCGGCGTTGAAGTCGGTGTTCCCGATCACCAGCTATTCGGGCAATGCCGCGCTGGAATATGTCGAATACCGTCTCGGC GAACCCGGCTTCGACGAGCGCGAATGCCGCAGTCGCGGCATGACCTACGGTGCGCCGCTGCGCGTGACCGTGCGCCTGGT CATCTATGACAAGGACTCCCCGGCCTCCAAGAAGGCCGTGAAGTACGTCAAGGAGCAGGAAGTCTACATGGGCGAGATTC CGCTCATGACCGACACCGGCACCTTTATCGTCAACGGTACCGAGCGCGTCATCGTCTCGCAGCTGCATCGCTCGCCGGGC GTGTTCTTCGACCATGACCGCGGCAAGACCCACAGCTCGGGCAAGCTGCTGTTCTCGGCGCGCGTGATTCCTTACCGCGG CTCCTGGCTGGACTTCGAGTTCGACCCCAAGGATGCGCTGTTCACCCGTATCGACCGTCGCCGCAAGCTGCCGGTGACGG TGCTGCTGCGCGCGCTGGGTTACAACAACGAAGAGATGCTGTCGATCTTCTTCGAGCACAACGTATTCCACCTCGGCAAG ACCGGCACCACCACCCTGGAGCTGGTCGCCGAGCGTCTGCGCGGTGAAACCCTGAGCTTCGACCTGGTCGCTGGCGACAA GGTCATCGTCGAGGCCGGCAAGCGCATCACCGCTCGTCACGTGCGCCTGCTGGCTGCCGAAAACCTGACCGAGCTGGATG TGCCGGACGACTATCCGGTCGGCCGCATCCTGGCGACCGATATCGTCAACAAGGCGACCGGCGAGCTGCTGGCCTCGGCC AATGACGAGATCACCCCGGAACAGCTGGAGCAGTTCCGTTGCGCCGGCATCGAAACCCTGCCGACCCTGTACGTCAACGA CCTGGATCGCGGTGCCTATATCTCGCATACCCTGCGGATCGATACCACCACCACGCCGCTGGAAGCCCTGGTCGAAATCT ACCGGATGATGCGTCCGGGCGAGCCGCCGACCAAGGATGCCGCGCAGAACCTGTTCTACAACCTGTTCTTCACCTTCGAC CGCTACGACCTCTCGGGCGTGGGTCGCATGAAGTTCAACCGTCGTGTCGGTCGCAAGGACATTCTGGGTCCGGGCGTGCT GTACGACCACAAGTACTTCGCCGACCGCAAGGAAGACGAATCGCAGAAGCTGGTCAAGGAACTGGGCGACAGCTCGGATA TCCTGGATGTGCTGAAGGTCCTGATCGAGATCAAGAACGGTCATGGCACCGTCGATGACATCGACCATCTGGGCAATCGT CGCGTGCGCTCGGTCGGTGAAATGGCCGAGAACACCTTCCGCATCGGTCTGGTCCGCGTCGAGCGCGCCGTCCGCGAGCG TCTGTCGCTGGCCGAGGCCGATGGTCTGACCCCGCAGGATCTGATCAATGCCAAGCCGGTGGCGGCGGCGGTCAAGGAAT TCTTCGGCTCCTCGCAGCTGTCGCAGTTCATGGACCAGAACAACCCGCTGTCGGAAGTGACCCACAAGCGCCGTGTTTCG GCGTTGGGACCCGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAAGTCCGCGACGTGCACCCGACCCATTACGGCCGCGT CTGCACCATCGAAACCCCGGAAGGCCCGAACATCGGCCTGATCAACTCGCTGGCCGTGTATGCCCGCACCAACCAGTATG GCTTCCTCGAGACGCCGTACCGCAAGGTGGTGGGCGGCAAGGTGACCGACGAAGTCGAGTACCTGTCGGCGATCGAAGAG GGCGATCATGTCATCGCCCAGGCCAACTCGCCGCTGGGCAAGGATGGCGGCTTCCTGGAAGACTTCGTGTCCTGCCGTTT CCGCGGCGAGTCCGAGCTGCGTCCTTCCGCCGAAATCGGCTACATGGACGTTTCGCCCATGCAGACCGTGTCGGTCGCGG CGGCGCTGGTGCCCTTCCTGGAACACGATGACGCCAACCGCGCACTGATGGGCGCGAACATGCAGCGTCAGGCCGTGCCG ACCCTGCGTTCGCAGACCCCGCTGGTGGGTACCGGCATCGAGCGCGCCGTGGCGCGTGACTCGGGCGTGATCGTGACCGC CAAGCGCGGTGGCGTGATCGACCAGGTCGATGCGGCCCGTATCGTGGTGCGCGTGAACGAGGAAGAAGTCGGTGACCATG ACGCCGGCGTCGACATCTACACCCTGACCAAGTACACCCGTTCCAACCAGAACACCAACCTGAACCAGCGTCCGCTGGTG AACGTCGGTGACGTGGTCGCGGTGGGCGATACCCTGGCCGATGGTTCGTCGACCGATCTGGGTGAGCTGGCTCTGGGCCA GAACATGCTGATCGCCTTCATGCCCTGGAACGGCTACAACTTCGAAGACTCGATCCTGCTGTCCGAGCGGGTGGTCCAGG AAGACCGCTACACCTCGATCCACATCGAGGAACTGGCCTGCATCGCTCGCGATACCAAGCTGGGTGCGGAGGAAATCTCG GCCGATATCCCGAACGTGGGCGAGTCCGCGCTGTCGCGCCTGGACGAGTCCGGCATCGTCTATATCGGTGCCGAAGTGAA GGTGGGCGACATCCTGGTCGGCAAGGTGACCCCGAAGGGCGAATCCCAGCTGACCCCGGAAGAGAAGCTGCTGCGCGCGA TCTTCGGCGAAAAGGCTTCCGACGTGAAGGACAGCTCGCTGCGCGTGCCGCCCGGCATGGACGGCACCGTCATCGACGTG CAGGTCTTCACCCGTGACGGCGTGGAGAAGGACAAGCGTGCCCGCCAGATCGAGGAAACCGAGCTGAAGCGGATCCGCAA GGATCTGGACGACCAGTTCCGCATTCTGGAAGGCGCGATCTACAACCGTCTGCGTGCACAGCTGGTCGGCAAGGTCGCCA CCTCGGGTCCGAACGGCCTGAAGCGCGGCAACGAGATCACCGATGTCTATCTGGACGGCCTGAAGAAGGACGACTGGTTC AAGATCAACGTCAAGGACGAAGATGCCGCCGAATTCCTGGAGCGCGCCGCCGAACAGATCCGTGGTCACAAGGACGAGTT CGAGAAGCGCTTCAAGGAAAAGCAGGGCAAGCTGACCCAGGGCGACGATCTGGCTCCGGGCGTGCTGAAGATGGTCAAGG TGTTCCTGGCCGTGAAGCGTCGCATCCAGCCCGGTGACAAGATGGCAGGTCGCCACGGCAACAAGGGTGTGGTCTCCAAC GTGGTGCCGGTCGAAGACATGCCCTTCATGGCTGACGGCAACTCGGTGGATATCTGCCTGAATCCGCTGGGCGTGCCCTC GCGTATGAACATCGGTCAGATTCTGGAAGTGCATCTGGGCTGGGCCGCCAAGGGCCTGGGCCGCAAGATCCAGAAGATGA TGGAGGCCCGCGAGAAGGTCACCCAGATCCGCGCGTTCCTGGACCAGATCTACAACACCTCGCAGATTGCCGGTGCGGTG CAGAACGTGGATCTGAGCTCCCTGACCGACGAGGAGATCATGACCCTGGCCACCAACCTTCAGGAAGGCGTGCCGATGGC GACGCCGGTGTTCGATGGTGCCGAGGAAACCGAGATCAAGGCCATGCTGAAGCTGGCCGATCTGCCGGAATCCGGTCAGA CCACCTTGTACGACGGTCGTACCGGTGAGGCTTTCGATCGCCCGGTCACCGTGGGCTATATGCACTACCTGAAGCTGAAC CATCTGGTCGACGACAAGATGCACGCCCGTTCGACCGGCCCGTACTCCCTGGTCACCCAGCAGCCGCTGGGCGGCAAGGC CCAGTTCGGTGGCCAGCGCTTCGGTGAAATGGAAGTCTGGGCGCTGGAAGCCTACGGCGCGGCCTACACCCTGCAGGAAA TGCTGACGGTGAAGTCCGATGACGTGCAGGGCCGCAACCAGATGTACAAGAACATTGTCGACGGCAACCACGAGATGGCG GCGGGCATGCCGGAATCCTTCAATGTGCTGGTGAAGGAAATCCGTTCGCTCGGTATCGACATCGACCTGGAAGAGATCAA GTGA Protein sequence : MTYSFTEKKRIRKDFGKRPPVLGVPNLLTIQTDSYKEFLQEDVSPKKRAERGLNAALKSVFPITSYSGNAALEYVEYRLG EPGFDERECRSRGMTYGAPLRVTVRLVIYDKDSPASKKAVKYVKEQEVYMGEIPLMTDTGTFIVNGTERVIVSQLHRSPG VFFDHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDALFTRIDRRRKLPVTVLLRALGYNNEEMLSIFFEHNVFHLGK TGTTTLELVAERLRGETLSFDLVAGDKVIVEAGKRITARHVRLLAAENLTELDVPDDYPVGRILATDIVNKATGELLASA NDEITPEQLEQFRCAGIETLPTLYVNDLDRGAYISHTLRIDTTTTPLEALVEIYRMMRPGEPPTKDAAQNLFYNLFFTFD RYDLSGVGRMKFNRRVGRKDILGPGVLYDHKYFADRKEDESQKLVKELGDSSDILDVLKVLIEIKNGHGTVDDIDHLGNR RVRSVGEMAENTFRIGLVRVERAVRERLSLAEADGLTPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVS ALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGPNIGLINSLAVYARTNQYGFLETPYRKVVGGKVTDEVEYLSAIEE GDHVIAQANSPLGKDGGFLEDFVSCRFRGESELRPSAEIGYMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQRQAVP TLRSQTPLVGTGIERAVARDSGVIVTAKRGGVIDQVDAARIVVRVNEEEVGDHDAGVDIYTLTKYTRSNQNTNLNQRPLV NVGDVVAVGDTLADGSSTDLGELALGQNMLIAFMPWNGYNFEDSILLSERVVQEDRYTSIHIEELACIARDTKLGAEEIS ADIPNVGESALSRLDESGIVYIGAEVKVGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDGTVIDV QVFTRDGVEKDKRARQIEETELKRIRKDLDDQFRILEGAIYNRLRAQLVGKVATSGPNGLKRGNEITDVYLDGLKKDDWF KINVKDEDAAEFLERAAEQIRGHKDEFEKRFKEKQGKLTQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSN VVPVEDMPFMADGNSVDICLNPLGVPSRMNIGQILEVHLGWAAKGLGRKIQKMMEAREKVTQIRAFLDQIYNTSQIAGAV QNVDLSSLTDEEIMTLATNLQEGVPMATPVFDGAEETEIKAMLKLADLPESGQTTLYDGRTGEAFDRPVTVGYMHYLKLN HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGNHEMA AGMPESFNVLVKEIRSLGIDIDLEEIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 68 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 68 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 69 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 69 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 68 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 67 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| Fraau_0646 | YP_005376801.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
