Gene Information

Name : RGE_30470 (RGE_30470)
Accession : YP_005437885.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3237454 - 3237972 bp
Length : 519 bp
Strand : -
Note : -

DNA sequence :
GTGCACGCCGTCGCCGAACCCGCCCTGCAACAGCAAGTCCGCGCGCTCTACGGCGAGCACCACGGCTGGCTGCACGGCTG
GCTGCGCCGGCGCCTGGGCTGTGCCGACCACGCCGCCGACCTGGCGCACGACACCTATCTGCGCCTGCTCGTCAGCGGCC
GCACGCCGCCGCCGGGCCAGGCGCGGCCGCACCTGATGCAGATCGCCAAGGGCCTGGTGATCGACCGCCACCGGCGCCAG
CTCGTCGAGCAGGCCTACCTGGATGCGATCGCGGCCCAGCCGTCGGCGCTGGCACCGTCGCCCGAGGCGCGTGCGATCGC
GCTCCAGGCGCTGCTGCGCATCGACGCCGCGCTCAGCGCGCTGGCACCGGCGGTGCGCGAGGTATTCCTGCTGTCGCAGT
TCGACGGCCTGACCTACGCCGAGATCGCCGCGCGCCAGGGCATCGCGGTGGCGACGGTGCGCAAGTACATGCTGAAGGCG
CTGGAAGCCTGCTTTCTCGCCTTCGACGGCGATGACTGA

Protein sequence :
MHAVAEPALQQQVRALYGEHHGWLHGWLRRRLGCADHAADLAHDTYLRLLVSGRTPPPGQARPHLMQIAKGLVIDRHRRQ
LVEQAYLDAIAAQPSALAPSPEARAIALQALLRIDAALSALAPAVREVFLLSQFDGLTYAEIAARQGIAVATVRKYMLKA
LEACFLAFDGDD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 2e-27 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RGE_30470 YP_005437885.1 ECF subfamily RNA polymerase sigma-70 factor VFG1049 Protein 7e-28 47