Gene Information

Name : RGE_30530 (RGE_30530)
Accession : YP_005437891.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3245533 - 3246033 bp
Length : 501 bp
Strand : -
Note : -

DNA sequence : 
ATGTCTGCCTCCGCCACCTCCGTCCACCCGGTCCAGACGCTGTACCTCGAGCACCATGGCTGGCTGCAGGCCTGGTTGCG
GCGCCGGCTGGACGACTCGCAGCAGGCCGCCGACCTGGCGCACGACACCTTCGTGCGCCTGCTCGCCGGGCGGCGAGAGC
ACTTCGGCGACGAGCCGCGTGCGCTGCTGACGCACGTCGCCAAGGGGCTGGTCGTCGACCACTGGCGCCGGCGCGAGGTC
GAGCGCGCCTACCTGGAGGCGCTGGCGGCGATGCCCGAGGCCCAGGCGCCGTCGCCCGAGACACGGCTGGCGCTGCTGCA
GACGCTGGTGCAGATCGATGCGCTGCTCGCCGGCCTCGCGCCGCGCACACGCGAGTGTTTCCTGCTCGCCCAGCTCGACG
GCCTGACGCTGGCGCAGATCGCCGAACGCCTGGCGATGTCGGTCATCACCGTGCGCCGCCACGTGCACAAGGCGCTGGTC
GCCTGCATGGCCTGCGTCTGA

Protein sequence : 
MSASATSVHPVQTLYLEHHGWLQAWLRRRLDDSQQAADLAHDTFVRLLAGRREHFGDEPRALLTHVAKGLVVDHWRRREV
ERAYLEALAAMPEAQAPSPETRLALLQTLVQIDALLAGLAPRTRECFLLAQLDGLTLAQIAERLAMSVITVRRHVHKALV
ACMACV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 3e-33 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RGE_30530 YP_005437891.1 ECF subfamily RNA polymerase sigma-70 factor VFG1049 Protein 1e-33 46