Gene Information

Name : RGE_30560 (RGE_30560)
Accession : YP_005437894.1
Strain : Rubrivivax gelatinosus IL144
Genome accession: NC_017075
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-70 factor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3249540 - 3250049 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
GTGCCGGCCACCGACCTCGCCTCACCGCCACCGTTCGAGCGCCTGTACGCCGAGCACCACGGCTGGCTGCGCGACTGGCT
GCGCCGCAAGCTGGGCAACGCCCACGACGCCGCCGACCTGGCGCACGACACCTATCTGCGATTGCTGCGCAGCGGCCACG
TGCCGCCGCAGGACGCGTCGCGCCGCCATCTGGCGCAGGTCGCCAACGGCCTCGTCGTCGACCTGTACCGGCGGCGGGCG
ATCGAGGCCGCGTACCTCGACGCGCTGGCGGCCTTGCCCCCGGCGCTGATGCCCTCGCCCGAGGAGCGTGCGCTGGCCGT
CGAGGCGCTGGTGCAGCTGGACGCCGCGCTGCAGTCGCTGGCGCCCAAGGCGCGCGAGGCGCTGCTGCTGTGCCGGCTCG
ACGGCCTGGGCTACCGCGAGATCGCCACGCGGCTGGGCGTCTCGGTGTCCTCGGTCGAGAAGTACGTCGCCGCGGCGCTG
CTGGCCTGCCACCGGGCGCTGCAGCCGTGA

Protein sequence : 
MPATDLASPPPFERLYAEHHGWLRDWLRRKLGNAHDAADLAHDTYLRLLRSGHVPPQDASRRHLAQVANGLVVDLYRRRA
IEAAYLDALAALPPALMPSPEERALAVEALVQLDAALQSLAPKAREALLLCRLDGLGYREIATRLGVSVSSVEKYVAAAL
LACHRALQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL08458.1 FecI Virulence SRL Protein 1e-27 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
RGE_30560 YP_005437894.1 ECF subfamily RNA polymerase sigma-70 factor VFG1049 Protein 4e-28 51