|
Name : rpoB (RGE_03200) Accession : YP_005435164.1 Strain : Rubrivivax gelatinosus IL144 Genome accession: NC_017075 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta RpoB Function : - COG functional category : - COG ID : - EC number : 2.7.7.6 Position : 336033 - 340154 bp Length : 4122 bp Strand : + Note : - DNA sequence : ATGGCGCAAGCAACCCCCTACACGTTCACCGAGCGCAAGCGCATCCGCAAGAGCTTCGGCAAGCGCGAGAACGTCCTCAA GGTCCCCTATCTGCTGACGATGCAGAGCGACTCCTACGTCGCCTTCCTGCAAAAGGATGTGCCGCCGCAGCAGCGCAAGC CCGAGGGCCTGCAGGCGGCCTTCCTGTCGGCGTTCCCGATCGTCTCCCACAACGGCTTCGTGGAGATGAAGTTCCTCGAG TACAACATCGCGAAGCCGCCGTTCGACGTGCGCGAGTGCCAGCAGCGGGGCCTGACCTTCGCCGCGGCCGTGCGCGCGAA GCTGCAGATGATCATCTACGACCGGGAGTCGCATCCCGCCAAGGTCGTCAAGGAGATCAAGGAGCAGGAGGTCTACATGG GCGAAGTGCCCCTGATGACCGACTACGGCTCCTTCATCGTCAACGGCACCGAGCGTGTCATCGTCAGCCAGCTGCACCGT TCGCCGGGCGTGTTCTTCGAGCACGACAAGGGCAAGACGCACAGCTCGGGCAAGCTGCTGTTCAGCGCCCGCATCATCCC CTACCGCGGCTCCTGGCTGGACTTCGAGTTCGACCCGAAGGACATCCTGTACTTCCGCGTCGACCGTCGCCGCAAGATGC CGGTGACGATCCTGCTCAAGGCCATCGGCCTGAACCCCGAGCAGATCCTCAGCCACTTCTTCGTCTTCGACAACTTCCGC CTGATGGACTCGGGCGCGCAGATGGAGTTCGTGCCGGAGCGTCTGAAGGGCGAGATCGCGCGCTTCGACCTGACCGACAA GAACGGCGCCGTCATCGTCGAGAAGGACAAGCGCATCACCGCGCGCCACGTGCGCCAGCTCGAGCAGACCGGCACCACGT TCGTCAGCGTTCCCGAGGACTTCCTCGTCGGCCGCGTCATCGCGCGCAACATGGTCGACCCGGACACCGGTGAGATCGTC GCCAAGGCCAACGACGAAATCACCGAGACGCTGCTGAAGAAGCTGCGTTCGGCGGGCATCAAGGACATCCAGTGCCTGTT CACGAACGAGCTGAACCAGGGCGCGTACATCAGCCAGCCGCTGGCCTCTGACGAGACCGCCGACCAGCTCGCCGCCCGCG TCGCGATCTACCGCATGATGCGCCCCGGCGAACCGCCGACCGAGGACGCCGTCGAAGCGCTGTTCCATCGCCTGTTCTAC AGCGAGGACACCTACGACCTGTCGCGCGTCGGCCGGATGAAGTTCAACGCCCGCGTGGGCCGCGACACGCCGGACGGCAA GATGACGCTGTCCAACGAGGACATCCTCGACGTCGTCAAGATCCTCGTCGACCTGCGCAACGGCAACGGCGAAGTCGACG ACATCGACCACCTGGGCAACCGTCGCGTGCGTTGCGTCGGCGAACTGGCCGAGAACCAGTACCGCTCGGGCCTCGCGCGC ATCGAGAAGGCCGTCAAGGAACGCCTCGGCCAGGCCGAGACCGAAGCCCTGATGCCGCATGACCTGATCAACTCCAAGCC GATCAGCGCGGCGCTCAAGGAGTTCTTCGGGGCGAGCCAGCTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCCGAGA TCACGCACAAGCGTCGCGTCTCGGCCCTGGGCCCGGGCGGTCTGACCCGCGAGCGCGCCGGCTTCGAAGTCCGCGACGTG CACCCGACCCACTACGGCCGCGTCTGCCCGATCGAGACGCCGGAAGGCCCGAACATCGGCCTGATCAACTCGCTGGCGCT GTACGCGCAGTTGAACGAGTACGGCTTCCTGGAGACGCCGTATCGCCGCGTCGTCGACGGCAAGGTCACCGACCAGATCG ACTACCTGTCGGCCATCGAGGAAGGCAAGTACGTCATCGCCCAGGCCAACGCGACGCTGGACGGCGAAGGCCGCCTGATC GACGAACTGGTCTCGGCGCGCGAGAACGGCGAATCGGTGCTGCTGTCGCCGGAACGCGTGCAGTACATGGACGTGGCGCC GACGCAGATCGTCTCGGTCGCGGCCTCGCTCGTGCCCTTCCTCGAGCACGATGACGCGAACCGCGCACTGATGGGCGCCA ACATGCAGCGCCAGGCCGTGCCGACGCTGCGTCCGGAGAAGGCGCTGGTCGGGACCGGTGTCGAACGCGTCGCTGCGGTC GACTCGGGCACCGTGGTCACCGCCCGCCGCGGCGGCATCGTGGACTACGTCGACACCAACCGCATCGTCATCCGCGTCAA CGACGACGAGACGGTGGCCGGTGAAGTCGGCGTCGACATCTACAACCTGATCAAGTACCAGCGTTCGAACCAGAACACGA ACATCCACCAGCGCCCGATCGTGCGCCGCGGCGACCATGTCGGCGCCGGCGACGTCGTCGCCGACGGTGCGTCGACCGAC CTGGGCGAGCTCGCGCTCGGCCAGAACATGCTGGTCGCGTTCATGCCCTGGAACGGCTACAACTTCGAAGACTCGATCCT GATCAGCGAGCGCGTCGTCGCCGAAGACCGCTACACCTCGATCCACATCGAGGAACTGGTGGTGATGGCCCGCGACACCA AGCTGGGCTCCGAAGAAATCACGCGCGACATCCCGAACCTGAGCGAGCAGCAGCTCGCCCGCCTGGATGAATCCGGCATC GTCTACATCGGCGCCGAGGTGAACCCGGGCGACGTGCTGGTCGGCAAGGTCACGCCCAAGGGCGAGACGACGCTGACGCC GGAAGAGAAGCTGCTGCGCGCGATCTTCGGCGAGAAGGCCTCCGACGTGAAGGACACCTCGCTGCGTGTCGACCAAGGCA CCAGCGGCACGGTCATCGACGTGCAGGTCTTCACCCGTGAAGGCATCCAGCGCGACAAGCGCGCCCAGCAGATCATCGAC GACGAGCTCAAGCGCTTCCGCCTGGACCTGAACGACCAGCTGCGCATCGTCGAGGCCGACGCGTTCGACCGGATCGAGAA GCTGCTGGCCGGCCGCGTCGCCAACGGCGGCCCGCAGAAGATCGCCAAGGGCACGACCATCACCAAGGAATACCTGGCGA CGGTCGAGAAGTACCACTGGTTCGACATCCGCCCGGCCGAGGACGAGGTCGCCAACCAGCTCGAGTCGATCAAGAACTCG CTCGAGCAGACGCGCCACAGCTTCGACCTCGCGTTCGAAGAGAAGCGCAAGAAGCTGACGCAAGGCGACGAGCTGCCCGC CGGCGTGCTGAAGATGGTGAAGGTCTACCTCGCCGTCAAGCGCCGCCTGCAGCCCGGCGACAAGATGGCCGGCCGCCACG GCAACAAGGGTGTCGTGTCCAAGATCGTCGCGATCGAGGACATGCCCTACATGGCCGACGGCACGCCGTGCGACATCGTG CTGAACCCGCTGGGCGTGCCCTCGCGGATGAACGTCGGGCAGGTGCTCGAAGTGCACCTGGGCTGGGCCGGCAAGGGCAT CGGCCAGCGCATCGGCGACATGCTGCAGCAGCAGGCGCGTGCCGCCGAGCTGCGTGAACTCTTCGACGAGCTCTACAACA AGTCCGGCGGCAAGACCGAGTCGCTGCAGGACCTGAGCGACGACGAGATCGTCGAGATGGCGAAGAACCTGCAGCACGGC GTGCCGTTCGCGACGCCGGTGTTCGACGGTGCGGAGGAGCAGGAGATCCGCGCGATGCTCAAGCTCGCCTACCCGGACGA GCTGGCTGCGCGCAAGGGCCTCACCGCCACGCGCACCCAGGCCACGCTGCACGACGGCCGCACCGGCGAAGCCTTCGAGC GTCCGGTCACCGTCGGCTACATGCACGTGCTGAAGCTGCACCACCTGGTCGACGACAAGATGCACGCCCGCTCGACCGGC CCGTGCAGCCTGGTCACGCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGTGGCCAGCGCTTCGGTGAAATGGAAGTCTG GGCACTCGAGGCCTACGGCGCCAGCTACATCCTGCAGGAAATGCTGACGGTGAAGTCCGACGACGTGAACGGTCGGACCA AGGTCTACGAGAACATCGTCAAGGGCGAGCACTCGATCGAAGCCGGCATGCCGGAATCGTTCAACGTGCTGGTCAAGGAA ATTCGTTCGCTCGGCATCGACATCGAACTGGAACGGGATTGA Protein sequence : MAQATPYTFTERKRIRKSFGKRENVLKVPYLLTMQSDSYVAFLQKDVPPQQRKPEGLQAAFLSAFPIVSHNGFVEMKFLE YNIAKPPFDVRECQQRGLTFAAAVRAKLQMIIYDRESHPAKVVKEIKEQEVYMGEVPLMTDYGSFIVNGTERVIVSQLHR SPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPEQILSHFFVFDNFR LMDSGAQMEFVPERLKGEIARFDLTDKNGAVIVEKDKRITARHVRQLEQTGTTFVSVPEDFLVGRVIARNMVDPDTGEIV AKANDEITETLLKKLRSAGIKDIQCLFTNELNQGAYISQPLASDETADQLAARVAIYRMMRPGEPPTEDAVEALFHRLFY SEDTYDLSRVGRMKFNARVGRDTPDGKMTLSNEDILDVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRSGLAR IEKAVKERLGQAETEALMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDV HPTHYGRVCPIETPEGPNIGLINSLALYAQLNEYGFLETPYRRVVDGKVTDQIDYLSAIEEGKYVIAQANATLDGEGRLI DELVSARENGESVLLSPERVQYMDVAPTQIVSVAASLVPFLEHDDANRALMGANMQRQAVPTLRPEKALVGTGVERVAAV DSGTVVTARRGGIVDYVDTNRIVIRVNDDETVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVRRGDHVGAGDVVADGASTD LGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELVVMARDTKLGSEEITRDIPNLSEQQLARLDESGI VYIGAEVNPGDVLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVDQGTSGTVIDVQVFTREGIQRDKRAQQIID DELKRFRLDLNDQLRIVEADAFDRIEKLLAGRVANGGPQKIAKGTTITKEYLATVEKYHWFDIRPAEDEVANQLESIKNS LEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVAIEDMPYMADGTPCDIV LNPLGVPSRMNVGQVLEVHLGWAGKGIGQRIGDMLQQQARAAELRELFDELYNKSGGKTESLQDLSDDEIVEMAKNLQHG VPFATPVFDGAEEQEIRAMLKLAYPDELAARKGLTATRTQATLHDGRTGEAFERPVTVGYMHVLKLHHLVDDKMHARSTG PCSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQEMLTVKSDDVNGRTKVYENIVKGEHSIEAGMPESFNVLVKE IRSLGIDIELERD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 64 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 64 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP002695.1.gene18.p0 | Protein | 0.0 | 77 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_008702.1.4609796. | Protein | 0.0 | 73 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_011035.1.6448762. | Protein | 0.0 | 72 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_002516.2.881699.p | Protein | 0.0 | 66 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP001918.1.gene250.p | Protein | 0.0 | 65 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP001138.1.gene4362. | Protein | 0.0 | 65 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_002695.1.914942.p | Protein | 0.0 | 65 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP004022.1.gene2794. | Protein | 0.0 | 65 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP000034.1.gene3741. | Protein | 0.0 | 65 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP000647.1.gene4402. | Protein | 0.0 | 65 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_009085.4918494.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_010400.5987325.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_010611.6233925.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_011595.7060572.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_010410.6003841.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | NC_011586.7046027.p0 | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | CP000675.2.gene392.p | Protein | 0.0 | 64 |
| rpoB | YP_005435164.1 | DNA-directed RNA polymerase subunit beta RpoB | AM180355.1.gene120.p | Protein | 0.0 | 45 |
